Gene
| Gene Model ID | pfu_aug2.0_38.1_26717 |
|---|---|
| Locus | scaffold38.1 : 356600 ... 371818 : + |
| To GenomeBrowser | scaffold38.1:356600..371818 |
| Genes list of scaffold | scaffold38.1 |
| Synonym | pfu_aug1.0_5215.1_45145 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_38.1_26717.t1 | 3 | 1 | IBR | 31 | 42 | 1.8e-21 | 75.7 | 0.076 | 140.0 | 2.4 |
| pfu_aug2.0_38.1_26717.t1 | 3 | 2 | IBR | 86 | 146 | 1.8e-21 | 75.7 | 4.9e-19 | 9.0e-16 | 57.5 |
| pfu_aug2.0_38.1_26717.t1 | 3 | 3 | IBR | 160 | 212 | 1.8e-21 | 75.7 | 5.9e-10 | 1.1e-06 | 28.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_38.1_26717.t1 | gi|524879783|ref|XP_005096563.1| | PREDICTED: E3 ubiquitin-protein ligase arih1-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_38.1_26717.t1 | gi|676463849|ref|XP_009056733.1| | hypothetical protein LOTGIDRAFT_178640 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_38.1_26717.t1 | gi|291233619|ref|XP_002736743.1| | PREDICTED: E3 ubiquitin-protein ligase arih1-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_38.1_26717.t1 | gi|585676371|ref|XP_006818946.1| | PREDICTED: E3 ubiquitin-protein ligase arih1-like isoform X2 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_38.1_26717.t1 | gi|47086193|ref|NP_998088.1| | E3 ubiquitin-protein ligase arih1l [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_38.1_26717.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_38.1_26717.t1 atgacacgatcagcatctgctgctgccagctctgatgtcatgtgtgaaatatgttacctcaccataccagcttctgaact gacagggttagaatgtggtcatcgtttctgtgcaccatgctggacagactatcttacttccaaaatcgtgaatgaaggca tgggacagactatttcatgtgcagcatacggttgtgacattcttgtagacgatgccactgttatgaaccttatcaaggat aggagagtgaaattaaaataccaacagcttattaccaatagttttgtagagtgtaatcgtttactacgatggtgccctgc ccctgattgtggccatgcagtcaaagtacaatactttgatactaaaccagtcacctgttcctgtggccatacgttttgct ttgcctgtggtgaaaattggcatgatccagtccaatgtaaatggttaaggaagtggataaagaaatgtgatgatgatagc gaaacttccaactggatagcagccaatacaaaggaatgtccaaaatgtcatgttaccattgagaaagatggagggtgtaa tcacatggtgtgtaaaaaccagaactgtaaagctgatttttgttgggtgtgtctaggcccctgggagcctcatggatctt catggtataactgtaatagatatgatgaagatgaagcaaagaaggcaagagatgcccaagagcattctaggtcagctcta cagagataccttttctactgcaacagatacatgaatcacatgcagagtctcaagtttgaaaacaaactatatgcttctgt gaagctgaaaatggaagaaatgcaacaacatatgtcatggatagaagttcaattcctcaaaaaagctgtagatgttttat gtctatgtagacagactcttatgtttacttatgtatttgccttttatcttaagaaaaacaaccagtcaatcatttttgag gataatcagaaggatctggaaaatgccacagagcaactttctgaatatttagagagagatattacttctgatatgctcaa cgacatcaaacaaaaagtccaggataaatataggtactgtgagagtagaaggaacgttttattgggacatgtacatgaag gatacgagaaagacctgtgggaataccatgatatataa |
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Protein
| Protein ID | pfu_aug2.0_38.1_26717.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_38.1_26717.t1 MTRSASAAASSDVMCEICYLTIPASELTGLECGHRFCAPCWTDYLTSKIVNEGMGQTISCAAYGCDILVDDATVMNLIKD RRVKLKYQQLITNSFVECNRLLRWCPAPDCGHAVKVQYFDTKPVTCSCGHTFCFACGENWHDPVQCKWLRKWIKKCDDDS ETSNWIAANTKECPKCHVTIEKDGGCNHMVCKNQNCKADFCWVCLGPWEPHGSSWYNCNRYDEDEAKKARDAQEHSRSAL QRYLFYCNRYMNHMQSLKFENKLYASVKLKMEEMQQHMSWIEVQFLKKAVDVLCLCRQTLMFTYVFAFYLKKNNQSIIFE DNQKDLENATEQLSEYLERDITSDMLNDIKQKVQDKYRYCESRRNVLLGHVHEGYEKDLWEYHDI |
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