Gene
| Gene Model ID | pfu_aug2.0_38.1_26726 |
|---|---|
| Locus | scaffold38.1 : 599853 ... 615120 : + |
| To GenomeBrowser | scaffold38.1:599853..615120 |
| Genes list of scaffold | scaffold38.1 |
| Synonym | pfu_aug1.0_6922.1_60156 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_38.1_26726.t3 | 3 | 1 | RRM_1 | 59 | 128 | 0.0 | 176.6 | 9.5e-21 | 2.8e-17 | 62.0 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 1 | RRM_6 | 59 | 128 | 2.2e-38 | 130.0 | 3.0e-17 | 8.9e-14 | 51.2 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 1 | RRM_3 | 68 | 126 | 9.4e-10 | 38.2 | 1.1e-06 | 0.0032 | 17.3 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 1 | RRM_5 | 81 | 130 | 1.1e-17 | 63.5 | 7.6e-10 | 2.3e-06 | 27.3 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 2 | RRM_3 | 188 | 242 | 9.4e-10 | 38.2 | 0.077 | 230.0 | 1.6 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 2 | RRM_1 | 188 | 256 | 0.0 | 176.6 | 3.3e-18 | 9.7e-15 | 53.9 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 2 | RRM_6 | 188 | 255 | 2.2e-38 | 130.0 | 2.3e-13 | 6.9e-10 | 38.7 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 2 | RRM_5 | 202 | 260 | 1.1e-17 | 63.5 | 3.7e-07 | 0.0011 | 18.7 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 3 | RRM_1 | 473 | 540 | 0.0 | 176.6 | 1.6e-19 | 4.7e-16 | 58.1 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 3 | RRM_6 | 473 | 540 | 2.2e-38 | 130.0 | 8.5e-13 | 2.5e-09 | 36.9 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 3 | RRM_3 | 482 | 544 | 9.4e-10 | 38.2 | 7.9e-07 | 0.0023 | 17.7 |
| pfu_aug2.0_38.1_26726.t3 | 3 | 3 | RRM_5 | 508 | 543 | 1.1e-17 | 63.5 | 1.0e-05 | 0.03 | 14.1 |
Transcript
| Transcript ID | pfu_aug2.0_38.1_26726.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_38.1_26726.t1 atgtcacaatctggtcaagaggaagaaatagtagacttgaggcgctcagcctctagatctagatctaggtcacctgtaag gagaggaacaagatcaaggtcaaggtcgccaaaacgtgacagaccaagaagaatcaaccttatttctaaaagagtcataa taagcaatgtgccatatgaaatgaagtggcaagacataaaagacatattcagaaaagaagttggagaagtacagtatgtt gagatgtttgagaatcccgacggcaaatctaggggaacaggtatcattgagttcaaagacaaggacacggcaaggaaagc tattgaacaaatgcatcgctacaaaatgaaggatagaaacatagttgttagagaggagagggaaagtgatcagaacatgg gaagaggaggcggaagtgggatgatggctggactaggcatgatgggaaatatgggcggaggtggaatgatggggggcatg ggcggagtcaatcaacaagtcctgaatcaacttggaatcgatggacctctcagtgccacagtttttgtatcaaatcttga ttataaagtaacatggaagaagctgaaggatgtattcaaactagcggggaatgtaagacgtgctgaaataaaggaagaca aagacggtaaaagccgaggaatgggaactgttcagtttgaaactgtcgtagagtcggtgcaggctatttccatgttcaat aaccagacattgtttgacagaccaatgagagttaaaatggattcagcaacagcagtgtcaatgggcagagattctcaaaa atccatgttaccaagtggattaaaatcaattggtatgggattaggtgcaggtggccagcctcttcagaatatgggaggtg gaggaggaggaagcatggggggaatgagtggaatgggaaatatgggatctgggatgtcctctatgggagggatggggatg gatagcggcatgggactcgggggatccatgggtggaatgaactctatggggggaatgtcagggggaatggggggatctgg gatgtctggagggggaatgggaatgggaggaattggaggtatggggaattcacagatgtcagggatggggatgtctgggg gaatgaatgatggcttcagctccatgggatcagggggtatggggaacagcagctttgggggatcaggaatggggggtatg ggagacaggatgagtgggatgggatctggacttggaaacaatagctttggaatgatggacaacatgggtctgggatctaa ttatgggggatcaggaaatagctcgtttggatcatctgacagaatgagtggaagggacagagataggggaagggatatgg gaggaagggggcagacaaggcctgataactgtacagttatagttaagaatctgccttatgcaatcaaatggcaagacctg agggataaattcaaggaagcaggtgatgtgaagtttgctgagatcaaagttgagaacggaagatcccagggctggggact tgtcagatatggtagtcccgaggatgcacaagaagctatcgactatttcaacagatccaagattgagggtcgggagatag atgtcaaactgtaccgctaa |
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| Transcript ID | pfu_aug2.0_38.1_26726.t2 |
| Definition | - |
>pfu_aug2.0_38.1_26726.t2 atgataaggaaaattggggttgtacactgcacaggcacatgtagaaagagcgtcaatatcttgcgctcagcctctagatc tagatctaggtcacctgtaaggagaggaacaagatcaaggtcaaggtcgccaaaacgtgacagaccaagaagaatcaacc ttatttctaaaagagtcataataagcaatgtgccatatgaaatgaagtggcaagacataaaagacatattcagaaaagaa gttggagaagtacagtatgttgagatgtttgagaatcccgacggcaaatctaggggaacaggtatcattgagttcaaaga caaggacacggcaaggaaagctattgaacaaatgcatcgctacaaaatgaaggatagaaacatagttgttagagaggaga gggaaagtgatcagaacatgggaagaggaggcggaagtgggatgatggctggactaggcatgatgggaaatatgggcgga ggtggaatgatggggggcatgggcggagtcaatcaacaagtcctgaatcaacttggaatcgatggacctctcagtgccac agtttttgtatcaaatcttgattataaagtaacatggaagaagctgaaggatgtattcaaactagcggggaatgtaagac gtgctgaaataaaggaagacaaagacggtaaaagccgaggaatgggaactgttcagtttgaaactgtcgtagagtcggtg caggctatttccatgttcaataaccagacattgtttgacagaccaatgagagttaaaatggattcagcaacagcagtgtc aatgggcagagattctcaaaaatccatgttaccaagtggattaaaatcaattggtatgggattaggtgcaggtggccagc ctcttcagaatatgggaggtggaggaggaggaagcatggggggaatgagtggaatgggaaatatgggatctgggatgtcc tctatgggagggatggggatggatagcggcatgggactcgggggatccatgggtggaatgaactctatggggggaatgtc agggggaatggggggatctgggatgtctggagggggaatgggaatgggaggaattggaggtatggggaattcacagatgt cagggatggggatgtctgggggaatgaatgatggcttcagctccatgggatcagggggtatggggaacagcagctttggg ggatcaggaatggggggtatgggagacaggatgagtgggatgggatctggacttggaaacaatagctttggaatgatgga caacatgggtctgggatctaattatgggggatcaggaaatagctcgtttggatcatctgacagaatgagtggaagggaca gagataggggaagggatatgggaggaagggggcagacaaggcctgataactgtacagttatagttaagaatctgccttat gcaatcaaatggcaagacctgagggataaattcaaggaagcaggtgatgtgaagtttgctgagatcaaagttgagaacgg aagatcccagggctggggacttgtcagatatggtagtcccgaggatgcacaagaagctatcgactatttcaacagatcca agattgagggtcgggagatagatgtcaaactgtaccgctaa |
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| Transcript ID | pfu_aug2.0_38.1_26726.t3 |
| Definition | - |
>pfu_aug2.0_38.1_26726.t3 atgataaggaaaattggggttgtacactgcacaggcacatgtagaaagagcgtcaatatcttgcgctcagcctctagatc tagatctaggtcacctgtaaggagaggaacaagatcaaggtcaaggtcgccaaaacgtgacagaccaagaagaatcaacc ttatttctaaaagagtcataataagcaatgtgccatatgaaatgaagtggcaagacataaaagacatattcagaaaagaa gttggagaagtacagtatgttgagatgtttgagaatcccgacggcaaatctaggggaacaggtatcattgagttcaaaga caaggacacggcaaggaaagctattgaacaaatgcatcgctacaaaatgaaggatagaaacatagttgttagagaggaga gggaaagtgatcagaacatgggaagaggaggcggaagtgggatgatggctggactaggcatgatgggaaatatgggcgga ggtggaatgatggggggcatgggcggagtcaatcaacaagtcctgaatcaacttggaatcgatggacctctcagtgccac agtttttgtatcaaatcttgattataaagtaacatggaagaagctgaaggatgtattcaaactagcggggaatgtaagac gtgctgaaataaaggaagacaaagacggtaaaagccgaggaatgggaactgttcagtttgaaactgtcgtagagtcggtg caggctatttccatgttcaataaccagacattgtttgacagaccaatgagagttaaaatggattcagcaacagcagtgtc aatgggcagagattctcaaaaatccatgttaccaagtggattaaaatcaattggtatgggattaggtgcaggtggccagc ctcttcagaatatgggaggtggaggaggaggaagcatggggggaatgagtggaatgggaaatatgggatctgggatgtcc tctatgggagggatggggatggatagcggcatgggactcgggggatccatgggtggaatgaactctatggggggaatgtc agggggaatggggggatctgggatgtctggagggggaatgggaatgggaggaattggaggtatggggaattcacagatgt cagggatggggatgtctgggggaatgaatgatggcttcagctccatgggatcagggggtatggggaacagcagctttggg ggatcaggaatggggggtatgggagacaggatgagtgggatgggatctggacttggaaacaatagctttggaatgatgga caacatgggtctgggatctaattatgggggatcaggaaatagctcgtttggatcatctgacagaatgagtggaagggaca gagataggggaagggatatgggaggaagggggcagacaaggcctgataactgtacagttatagttaagaatctgccttat gcaatcaaatggcaagacctgagggataaattcaaggaagcaggtgatgtgaagtttgctgagatcaaagttgagaacgg aagatcccagggctggggacttgtcagatatggtagtcccgaggatgcacaagaagctatcgactatttcaacagatcca agattgagggtcgggagatagatgtcaaactgaaccttaactttcccttgcgagtaggagggatgcagagagatatgatt cgagacattcacagaaccattgcttatacatttatcataaaagaatggtctttgaaagtttcccaggctaaaggaggaac aaagagagttgacaggacagacatctacaggtgcgatgacaattaa |
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Protein
| Protein ID | pfu_aug2.0_38.1_26726.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_38.1_26726.t1 MSQSGQEEEIVDLRRSASRSRSRSPVRRGTRSRSRSPKRDRPRRINLISKRVIISNVPYEMKWQDIKDIFRKEVGEVQYV EMFENPDGKSRGTGIIEFKDKDTARKAIEQMHRYKMKDRNIVVREERESDQNMGRGGGSGMMAGLGMMGNMGGGGMMGGM GGVNQQVLNQLGIDGPLSATVFVSNLDYKVTWKKLKDVFKLAGNVRRAEIKEDKDGKSRGMGTVQFETVVESVQAISMFN NQTLFDRPMRVKMDSATAVSMGRDSQKSMLPSGLKSIGMGLGAGGQPLQNMGGGGGGSMGGMSGMGNMGSGMSSMGGMGM DSGMGLGGSMGGMNSMGGMSGGMGGSGMSGGGMGMGGIGGMGNSQMSGMGMSGGMNDGFSSMGSGGMGNSSFGGSGMGGM GDRMSGMGSGLGNNSFGMMDNMGLGSNYGGSGNSSFGSSDRMSGRDRDRGRDMGGRGQTRPDNCTVIVKNLPYAIKWQDL RDKFKEAGDVKFAEIKVENGRSQGWGLVRYGSPEDAQEAIDYFNRSKIEGREIDVKLYR |
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| Protein ID | pfu_aug2.0_38.1_26726.t2 |
| Definition | - |
>pfu_aug2.0_38.1_26726.t2 MIRKIGVVHCTGTCRKSVNILRSASRSRSRSPVRRGTRSRSRSPKRDRPRRINLISKRVIISNVPYEMKWQDIKDIFRKE VGEVQYVEMFENPDGKSRGTGIIEFKDKDTARKAIEQMHRYKMKDRNIVVREERESDQNMGRGGGSGMMAGLGMMGNMGG GGMMGGMGGVNQQVLNQLGIDGPLSATVFVSNLDYKVTWKKLKDVFKLAGNVRRAEIKEDKDGKSRGMGTVQFETVVESV QAISMFNNQTLFDRPMRVKMDSATAVSMGRDSQKSMLPSGLKSIGMGLGAGGQPLQNMGGGGGGSMGGMSGMGNMGSGMS SMGGMGMDSGMGLGGSMGGMNSMGGMSGGMGGSGMSGGGMGMGGIGGMGNSQMSGMGMSGGMNDGFSSMGSGGMGNSSFG GSGMGGMGDRMSGMGSGLGNNSFGMMDNMGLGSNYGGSGNSSFGSSDRMSGRDRDRGRDMGGRGQTRPDNCTVIVKNLPY AIKWQDLRDKFKEAGDVKFAEIKVENGRSQGWGLVRYGSPEDAQEAIDYFNRSKIEGREIDVKLYR |
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| Protein ID | pfu_aug2.0_38.1_26726.t3 |
| Definition | - |
>pfu_aug2.0_38.1_26726.t3 MIRKIGVVHCTGTCRKSVNILRSASRSRSRSPVRRGTRSRSRSPKRDRPRRINLISKRVIISNVPYEMKWQDIKDIFRKE VGEVQYVEMFENPDGKSRGTGIIEFKDKDTARKAIEQMHRYKMKDRNIVVREERESDQNMGRGGGSGMMAGLGMMGNMGG GGMMGGMGGVNQQVLNQLGIDGPLSATVFVSNLDYKVTWKKLKDVFKLAGNVRRAEIKEDKDGKSRGMGTVQFETVVESV QAISMFNNQTLFDRPMRVKMDSATAVSMGRDSQKSMLPSGLKSIGMGLGAGGQPLQNMGGGGGGSMGGMSGMGNMGSGMS SMGGMGMDSGMGLGGSMGGMNSMGGMSGGMGGSGMSGGGMGMGGIGGMGNSQMSGMGMSGGMNDGFSSMGSGGMGNSSFG GSGMGGMGDRMSGMGSGLGNNSFGMMDNMGLGSNYGGSGNSSFGSSDRMSGRDRDRGRDMGGRGQTRPDNCTVIVKNLPY AIKWQDLRDKFKEAGDVKFAEIKVENGRSQGWGLVRYGSPEDAQEAIDYFNRSKIEGREIDVKLNLNFPLRVGGMQRDMI RDIHRTIAYTFIIKEWSLKVSQAKGGTKRVDRTDIYRCDDN |
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