Gene
| Gene Model ID | pfu_aug2.0_380.1_00672 |
|---|---|
| Locus | scaffold380.1 : 75281 ... 86825 : - |
| To GenomeBrowser | scaffold380.1:75281..86825 |
| Genes list of scaffold | scaffold380.1 |
| Synonym | pfu_aug1.0_4940.1_38027 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_380.1_00672.t1 | 2 | 1 | PTS_2-RNA | 377 | 411 | 8.5e-27 | 93.6 | 0.48 | 1800.0 | -2.0 |
| pfu_aug2.0_380.1_00672.t1 | 2 | 2 | PTS_2-RNA | 905 | 1069 | 8.5e-27 | 93.6 | 8.3e-30 | 3.1e-26 | 91.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_380.1_00672.t1 | gi|676479900|ref|XP_009061890.1| | hypothetical protein LOTGIDRAFT_166572 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_380.1_00672.t1 | gi|260786214|ref|XP_002588153.1| | hypothetical protein BRAFLDRAFT_68791 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_380.1_00672.t1 | gi|260782592|ref|XP_002586369.1| | hypothetical protein BRAFLDRAFT_108654 [Branchiostoma floridae] | 7.0e-23 |
| pfu_aug2.0_380.1_00672.t1 | gi|260781042|ref|XP_002585636.1| | hypothetical protein BRAFLDRAFT_274539 [Branchiostoma floridae] | 5.0e-19 |
| pfu_aug2.0_380.1_00672.t1 | gi|260818481|ref|XP_002604411.1| | hypothetical protein BRAFLDRAFT_265162 [Branchiostoma floridae] | 9.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_380.1_00672.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_380.1_00672.t1 atgcgcaagagtaacactaagcgagaaaatgaccacacccatcttccaagacccttggggtttgaatctcacacaaaaca tcaggcatcatcaaaaagcagaaacgacttattatatgttgcctcaagggagcgaatcttcataaatgaggttgagccta tccttgtccctaaccagtatactgccgtgtcagatatggatattgacactaacgccaggaggattacagagttttgctct ttaactgaatatggaacccctatgtttacccctggggatggtaattgtttgttcaatgctgtgtctctctgcctaaacgg agacatctccctttcttctgagttgagacttcgtacctgtattgagatggccaccaattcagcacggtatttaaatgacc ctctctttcagactctgggcttgggagtgccagattatgaaggatatgcaaaagcagtcattgattgtgctgtcaagggt agacactcatcaatctatacaatgtgggctttggccgaagttctcaacactccaattcactcaatatacccaagtatcaa tggttcccaagataattaccaccagaagttgacatgtgtcctaccactgtccaaaccatcatccaacacccctattcata tattatggtgtggaggtctgctgacttctaggattagttggtcccctgatcactttgttccactcctaagttatcagccc ctgctggaagtttggccttttttgccagaagaggaaagttgcagtacaccaagaaagagggataaccctttccaagtgca ctcaagttatgacgatgaaattctgatttcacctccaaaacccagcgatatgcccataactgaatccttgtcatgtacag atgtcccacaaacaaatgcaacctttgtgatctcttcagatagaagttgtgcagacacaattccttatgtttcaactttt gatgatgcaacaataccatatgatattgacagtcccacatcaagaaattccaaaggacagcccaccaaattcagcccggt gaattctgaaggacagcacaacagttgcagccccatatttgagcagattccccatggtggattaaacgcaaaagatataa tggccctggtaacatcgaaagagaagcgtgtttacaatacagttccatctgggaggaaagagaatgtctactttgtggtt gataatcaaaagaataaaaagaatggccacgaccaaagacgacgtgtcttttttgacgactgtggcgtttggaacaccag cagaaggaccactatacgcgatcacatagcaactgagggaatgaagagtgtcacacttaggaatggagtatactgcaccg agaagacagtaaagggtacaaaacaatgggttccactatcaccacagccagagaggaaagacgtggtccaaatccatagg tactatacatctttacgggcagatgagaatttcaagcgcatagtgatatgggtaacatctacttctaggccagaattgga caatgttgccatttatcagtaccaaggaaaattccctgaaggtggatgtgaacaaccccatggtaatgcgaaagaaaatg gtagaccatataaaagaaccgacccaaagcaacttgagaaagtgagagatgagccagatgagaaaaaaccgaaaaagata tacagagagatggtgttgaatgattccattaatgcgccgcgtgacatcaaattgatacgaaatgctcgatacacacaaag ggtaaaagatcatggcaaagttacagggaatgcagcagatgaaatccttagccttatatcatcaattgaccaacatcctt atgtccagaagattgaacacacaaagaataatgtgccagcaatcattttgtatgatgatgatcaacttgaagatttcagg ttctttgtgcgttctagaacggaatatagagttggcatagatagaactttcaatctcggtccctattttgttacctgtgt ggtatacaaaaacataagggtagtaaggaatgacacttctggtcatcctatctttcttggccctgtacttttgcataagg aggccacatttgaaacttaccactactttttttcccatctcaaggcaaaactgagcattgatctcaacaggattgattta gctattcctgggttctttgaatttggatcagatgatgagaaggcattggtaaaagctttagacagctgttttccaaatgc ccagcgtgctttgtgcacaaaacatttgaaagacaatgtgacatgctatctcagagataaggcaggtgtcacaagagaag acagaagggtaatctcaaatctaatttttggacagagggggctggtgaatgccgaagattcatttgagttccaacaacgg agcacacgcattatcagagcttccacacagtttcctagatttttacagtattttgagaggaacttgcagaaccgcataag ggactatgtcaatgcaccaagaagaaactctgacctggattcctcactgtggacaaataacaatgcagagtctatgaatc atgtcctgaaggtggcagcaaactggcagcctaagagcattactgatttagttgagctcctttacaatgaagtgaaactt caacttacagacttaagacgctctcttcatggagatggaaattaccgtctggcagtccagttccagcggatggatcacaa gcagctttccagacgacttgcctttgctttgcggcatgacagtcagctgccagttgatgaaaatggatggatctcgatta gggagctcagaaagtgtcaacaattccgtttcattcatgccgatattctgtatgacatcatcagtacctgcaataaacag cgccttgagatgtcgatagatggacgttgtgtgcgtgcaactagtggccataccattaacatcagggttgaaactctcct tacaccaatatgggatccttccattgtgccatattgtgcccatgcaacaaggattgaagtattacccaagataaagctct atggactccataggatgaagaggcattacgttcattttgctccacatccatcagcgctacgacaaccggcagaggcaatt attcatctggacgtagagaagtacatgagaagaaatccagggaagctctcctttacagccaatgggactattgtgactct tggaaataaatttggatatgtgaagccttgtttttttaagcgtattgaactgattgattag |
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Protein
| Protein ID | pfu_aug2.0_380.1_00672.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_380.1_00672.t1 MRKSNTKRENDHTHLPRPLGFESHTKHQASSKSRNDLLYVASRERIFINEVEPILVPNQYTAVSDMDIDTNARRITEFCS LTEYGTPMFTPGDGNCLFNAVSLCLNGDISLSSELRLRTCIEMATNSARYLNDPLFQTLGLGVPDYEGYAKAVIDCAVKG RHSSIYTMWALAEVLNTPIHSIYPSINGSQDNYHQKLTCVLPLSKPSSNTPIHILWCGGLLTSRISWSPDHFVPLLSYQP LLEVWPFLPEEESCSTPRKRDNPFQVHSSYDDEILISPPKPSDMPITESLSCTDVPQTNATFVISSDRSCADTIPYVSTF DDATIPYDIDSPTSRNSKGQPTKFSPVNSEGQHNSCSPIFEQIPHGGLNAKDIMALVTSKEKRVYNTVPSGRKENVYFVV DNQKNKKNGHDQRRRVFFDDCGVWNTSRRTTIRDHIATEGMKSVTLRNGVYCTEKTVKGTKQWVPLSPQPERKDVVQIHR YYTSLRADENFKRIVIWVTSTSRPELDNVAIYQYQGKFPEGGCEQPHGNAKENGRPYKRTDPKQLEKVRDEPDEKKPKKI YREMVLNDSINAPRDIKLIRNARYTQRVKDHGKVTGNAADEILSLISSIDQHPYVQKIEHTKNNVPAIILYDDDQLEDFR FFVRSRTEYRVGIDRTFNLGPYFVTCVVYKNIRVVRNDTSGHPIFLGPVLLHKEATFETYHYFFSHLKAKLSIDLNRIDL AIPGFFEFGSDDEKALVKALDSCFPNAQRALCTKHLKDNVTCYLRDKAGVTREDRRVISNLIFGQRGLVNAEDSFEFQQR STRIIRASTQFPRFLQYFERNLQNRIRDYVNAPRRNSDLDSSLWTNNNAESMNHVLKVAANWQPKSITDLVELLYNEVKL QLTDLRRSLHGDGNYRLAVQFQRMDHKQLSRRLAFALRHDSQLPVDENGWISIRELRKCQQFRFIHADILYDIISTCNKQ RLEMSIDGRCVRATSGHTINIRVETLLTPIWDPSIVPYCAHATRIEVLPKIKLYGLHRMKRHYVHFAPHPSALRQPAEAI IHLDVEKYMRRNPGKLSFTANGTIVTLGNKFGYVKPCFFKRIELID |
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