Gene
| Gene Model ID | pfu_aug2.0_380.1_00674 |
|---|---|
| Locus | scaffold380.1 : 100416 ... 109908 : + |
| To GenomeBrowser | scaffold380.1:100416..109908 |
| Genes list of scaffold | scaffold380.1 |
| Synonym | pfu_aug1.0_4940.1_38028 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor ap-2 beta | GO:0003700 GO:0005634 GO:0006355 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_380.1_00674.t1 | 1 | 1 | TLD | 1 | 119 | 1.9e-26 | 92.6 | 4.9e-30 | 3.6e-26 | 91.8 |
| pfu_aug2.0_380.1_00674.t1 | 1 | 1 | TF_AP-2 | 336 | 543 | 0.0 | 268.3 | 0.0 | 0.0 | 267.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_380.1_00674.t1 | gi|676464684|ref|XP_009056999.1| | hypothetical protein LOTGIDRAFT_121066, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_380.1_00674.t1 | gi|269785095|ref|NP_001161503.1| | transcription factor AP-2 beta [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_380.1_00674.t1 | gi|585684501|ref|XP_006819973.1| | PREDICTED: transcription factor AP-2 beta isoform X1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_380.1_00674.t1 | gi|194018628|ref|NP_001123400.1| | transcription factor AP-2-epsilon [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_380.1_00674.t1 | gi|632965824|ref|XP_007899083.1| | PREDICTED: transcription factor AP-2-alpha isoform X1 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_380.1_00674.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_380.1_00674.t1 atgattattagagaaaagggaggtcatgtgttcgggggatttgcctctcacagctgggaatgtaaaccgaaatattatgg tgagcccacttgtttcctgttttccttagccccacactatggtgtatatacagccactatgtataaccagaattttatgt acctgaacctcggtcaggagaccctcccaaatggactgggtatgggaggtcagtttgaatactgtgggttctggatagat gacagttataatactgggcacagtaaggccaagccaaaaaatacaacttatggaagcccacaactgtcatcatcagaaga gtttgaagtagaggctatagaggtgtgggctgtaggcagggaacctaaatctgatagtgatgaggaggcagagttagaga aaatgaatggagtaacaatgtatgaggggagtcaatatcaaagcagaaatgaaggtgttgattcttcacaatcggctttt catctacctgtgtcaacagccgagaattatcctgcaataacccaccatcagccgatgtcagattttcagccaccctattt tccacctccctttcagcaaccatctaccattgactaccaccagcaaccagtgcagccactgccacaaccacccagccact ttgccaccagtgatggctaccagtatatggggatgtttactcagcaaccggttgcggcaccagattataatcagggccta gattttgatagggtgcatgagtaccataaagctggtggggctatattacgaccagagccccagctggcaggtcaaggaca ttcacacatatatgacaaccaaggtcaaggtcatcacttgactggattgccgccacaacaactgatactaaatggtgaat ctaatgagatggactatgaggacaaatatatgtctggagatattctgaacggtagtgtagagaaaccattgataccccat aaagacaacaagcgtgacatggtaattcaagggcgggcaactcctgccgatgtgttttgtctggttgatgggagactttc cttattgagcagttcttcaaagtataaggttaccattgctgaaattcagaggaggttatctccccctgagtgtttgaatg cttctctactagggggagtcttaagacgtgccaagtctaaggatggaggacgcaccttaagggaaaaattagacaacatt gggctaagtttacctgcaggacggaggaaggctacacaagtaacgttatttacatcactagtggagggggaatcagtacg gctagctagggattatggatatgtttgtgagacagagtttcccactaagcaatgtgcggaatataatggcagacagtatg gcactacaactcaacaggagaaaatggcacggaaaaactcgatactagctgcgaaacaaatattgaaggaattcatggat ttaatgaacaaggacagatcgcctttagggaactcgatgccgccgcacatactggaatcggaagtacagcgccacctgac tcacttcagcatgatcacgcacggcttcggaggcccagccatagttgcttcccttgccatagtgcagaactaccttacag agatgatgaaaatgctagagaaaggttacccagacaacagcgcaaaacgcaagaagtaa |
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Protein
| Protein ID | pfu_aug2.0_380.1_00674.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_380.1_00674.t1 MIIREKGGHVFGGFASHSWECKPKYYGEPTCFLFSLAPHYGVYTATMYNQNFMYLNLGQETLPNGLGMGGQFEYCGFWID DSYNTGHSKAKPKNTTYGSPQLSSSEEFEVEAIEVWAVGREPKSDSDEEAELEKMNGVTMYEGSQYQSRNEGVDSSQSAF HLPVSTAENYPAITHHQPMSDFQPPYFPPPFQQPSTIDYHQQPVQPLPQPPSHFATSDGYQYMGMFTQQPVAAPDYNQGL DFDRVHEYHKAGGAILRPEPQLAGQGHSHIYDNQGQGHHLTGLPPQQLILNGESNEMDYEDKYMSGDILNGSVEKPLIPH KDNKRDMVIQGRATPADVFCLVDGRLSLLSSSSKYKVTIAEIQRRLSPPECLNASLLGGVLRRAKSKDGGRTLREKLDNI GLSLPAGRRKATQVTLFTSLVEGESVRLARDYGYVCETEFPTKQCAEYNGRQYGTTTQQEKMARKNSILAAKQILKEFMD LMNKDRSPLGNSMPPHILESEVQRHLTHFSMITHGFGGPAIVASLAIVQNYLTEMMKMLEKGYPDNSAKRKK |
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