Gene
| Gene Model ID | pfu_aug2.0_380.1_00681 |
|---|---|
| Locus | scaffold380.1 : 231562 ... 239394 : - |
| To GenomeBrowser | scaffold380.1:231562..239394 |
| Genes list of scaffold | scaffold380.1 |
| Synonym | pfu_aug1.0_35854.1_48212 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_380.1_00681.t1 | 1 | 1 | LSM | 18 | 80 | 5.4e-10 | 38.6 | 7.4e-14 | 1.1e-09 | 37.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_380.1_00681.t1 | gi|676456816|ref|XP_009054446.1| | hypothetical protein LOTGIDRAFT_79495, partial [Lottia gigantea] | 1.0e-27 |
| pfu_aug2.0_380.1_00681.t1 | gi|260790675|ref|XP_002590367.1| | hypothetical protein BRAFLDRAFT_76640 [Branchiostoma floridae] | 4.0e-27 |
| pfu_aug2.0_380.1_00681.t1 | gi|662197514|ref|XP_008471839.1| | PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Diaphorina citri] | 3.0e-26 |
| pfu_aug2.0_380.1_00681.t1 | gi|585668214|ref|XP_006817455.1| | PREDICTED: uncharacterized protein LOC100367675 [Saccoglossus kowalevskii] | 5.0e-26 |
| pfu_aug2.0_380.1_00681.t1 | gi|156377251|ref|XP_001630770.1| | predicted protein [Nematostella vectensis] | 6.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_380.1_00681.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_380.1_00681.t1 atgacgagcgagcgtgaaaaatacttggagaaaaacacgttgatttgtcttctaaaagctcttgagggaaaagaaactgt tatagaactcagaaatgagaatgcagtgactggaaaaatagaacatgtagatggattcatgaatgtttctatgtcaaatg tgatttttgaaacttataaaggaatttcgagggaattcgagtcattctttgtccaaggacaaaatattcgatatgtacat atccctgatgagattgacattcgtaaagccatggaagcacagcttggaattcgtaccaggatgagagaaaaaataacaag ggatgtcagaaacgctgctttgaagaaaattcagaagcgagaaagagaatatgagaaggaaagagttctgaaggaaagac aggcagaacgagagcagaaagaaaaaagatga |
|
Protein
| Protein ID | pfu_aug2.0_380.1_00681.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_380.1_00681.t1 MTSEREKYLEKNTLICLLKALEGKETVIELRNENAVTGKIEHVDGFMNVSMSNVIFETYKGISREFESFFVQGQNIRYVH IPDEIDIRKAMEAQLGIRTRMREKITRDVRNAALKKIQKREREYEKERVLKERQAEREQKEKR |
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