Gene
| Gene Model ID | pfu_aug2.0_3812.1_09230 |
|---|---|
| Locus | scaffold3812.1 : 1 ... 10508 : + |
| To GenomeBrowser | scaffold3812.1:1..10508 |
| Genes list of scaffold | scaffold3812.1 |
| Synonym | pfu_aug1.0_7169.1_60196 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3812.1_09230.t1 | 4 | 1 | EF-hand_8 | 29 | 49 | 7.3e-10 | 38.3 | 0.00022 | 0.29 | 10.7 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 1 | EF-hand_1 | 30 | 57 | 1.1e-16 | 58.7 | 2.2e-09 | 3.0e-06 | 26.1 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 1 | EF-hand_6 | 30 | 59 | 1.0e-12 | 46.7 | 2.1e-11 | 2.8e-08 | 32.9 |
| pfu_aug2.0_3812.1_09230.t1 | 3 | 1 | EF-hand_7 | 31 | 79 | 3.0e-13 | 49.7 | 2.3e-11 | 3.1e-08 | 33.6 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 1 | EF-hand_5 | 31 | 52 | 5.5e-08 | 31.7 | 3.4e-07 | 0.00045 | 19.4 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 2 | EF-hand_8 | 44 | 79 | 7.3e-10 | 38.3 | 4.6e-05 | 0.062 | 12.9 |
| pfu_aug2.0_3812.1_09230.t1 | 2 | 1 | RuvA_C | 54 | 76 | 4.6e-06 | 26.6 | 0.0002 | 0.28 | 11.4 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 2 | EF-hand_1 | 66 | 79 | 1.1e-16 | 58.7 | 0.0012 | 1.6 | 8.2 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 2 | EF-hand_6 | 67 | 79 | 1.0e-12 | 46.7 | 1.5 | 2000.0 | -0.9 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 2 | EF-hand_5 | 73 | 78 | 5.5e-08 | 31.7 | 0.3 | 410.0 | 0.5 |
| pfu_aug2.0_3812.1_09230.t1 | 2 | 2 | RuvA_C | 79 | 102 | 4.6e-06 | 26.6 | 6.7e-05 | 0.091 | 12.9 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 3 | EF-hand_8 | 80 | 105 | 7.3e-10 | 38.3 | 0.0037 | 5.0 | 6.8 |
| pfu_aug2.0_3812.1_09230.t1 | 3 | 2 | EF-hand_7 | 81 | 108 | 3.0e-13 | 49.7 | 0.011 | 15.0 | 5.8 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 3 | EF-hand_1 | 92 | 105 | 1.1e-16 | 58.7 | 0.001 | 1.3 | 8.4 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 3 | EF-hand_6 | 94 | 105 | 1.0e-12 | 46.7 | 1.2 | 1600.0 | -0.6 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 3 | EF-hand_5 | 99 | 104 | 5.5e-08 | 31.7 | 0.22 | 300.0 | 1.0 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 4 | EF-hand_1 | 112 | 138 | 1.1e-16 | 58.7 | 1.8e-07 | 0.00024 | 20.1 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 4 | EF-hand_6 | 112 | 137 | 1.0e-12 | 46.7 | 7.8e-05 | 0.11 | 12.4 |
| pfu_aug2.0_3812.1_09230.t1 | 3 | 3 | EF-hand_7 | 113 | 136 | 3.0e-13 | 49.7 | 0.00043 | 0.58 | 10.3 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 4 | EF-hand_8 | 113 | 134 | 7.3e-10 | 38.3 | 1.1e-05 | 0.014 | 14.9 |
| pfu_aug2.0_3812.1_09230.t1 | 4 | 4 | EF-hand_5 | 114 | 134 | 5.5e-08 | 31.7 | 7.8e-05 | 0.11 | 11.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3812.1_09230.t1 | gi|597731433|ref|XP_007228084.1| | PREDICTED: centrin-1-like isoform X2 [Astyanax mexicanus] | 3.0e-37 |
| pfu_aug2.0_3812.1_09230.t1 | gi|597731431|ref|XP_007228083.1| | PREDICTED: centrin-1-like isoform X1 [Astyanax mexicanus] | 3.0e-37 |
| pfu_aug2.0_3812.1_09230.t1 | gi|156383433|ref|XP_001632838.1| | predicted protein [Nematostella vectensis] | 2.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_3812.1_09230.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3812.1_09230.t1 gcaagctctaagaaggatgcccagcagggcggagggccaaggaaaaaaggaggccctgagttagagcttactgaggaaca gaaggcggatctcagggcagcgtttgatttatttgacgatgatggctcagggacaattgacggcaaagatttgaagatag cactgcgggcgcttggatttgagccgaagaaagaggaaattaagaagatggtggcagaggtggataaagacggatcagca ctgcgggcgcttggatttgagccgaagaaagaggaaattaagaagatggtggcagaggtggataaagacggatcagtttg tgttttattttattttcaggaacttattgatgtggcggatctagacaaagacggcgaggttaacgaaagagaattcatca atatcatcatgaagagaaagaatttgtactaa |
|
Protein
| Protein ID | pfu_aug2.0_3812.1_09230.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3812.1_09230.t1 ASSKKDAQQGGGPRKKGGPELELTEEQKADLRAAFDLFDDDGSGTIDGKDLKIALRALGFEPKKEEIKKMVAEVDKDGSA LRALGFEPKKEEIKKMVAEVDKDGSVCVLFYFQELIDVADLDKDGEVNEREFINIIMKRKNLY |
|