Gene
| Gene Model ID | pfu_aug2.0_3824.1_15867 |
|---|---|
| Locus | scaffold3824.1 : 10906 ... 19360 : + |
| To GenomeBrowser | scaffold3824.1:10906..19360 |
| Genes list of scaffold | scaffold3824.1 |
| Synonym | pfu_aug1.0_2211.1_44278 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3824.1_15867.t1 | 2 | 1 | F5_F8_type_C | 98 | 131 | 1.0e-06 | 28.6 | 1.5e-05 | 0.11 | 12.2 |
| pfu_aug2.0_3824.1_15867.t1 | 2 | 2 | F5_F8_type_C | 132 | 167 | 1.0e-06 | 28.6 | 1.9e-06 | 0.014 | 15.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3824.1_15867.t1 | gi|512940425|ref|XP_004909207.1| | 1.0e-08 | |
| pfu_aug2.0_3824.1_15867.t1 | gi|260835729|ref|XP_002612860.1| | hypothetical protein BRAFLDRAFT_67190 [Branchiostoma floridae] | 2.0e-08 |
| pfu_aug2.0_3824.1_15867.t1 | gi|260790409|ref|XP_002590235.1| | hypothetical protein BRAFLDRAFT_97399 [Branchiostoma floridae] | 4.0e-08 |
| pfu_aug2.0_3824.1_15867.t1 | gi|260794774|ref|XP_002592382.1| | hypothetical protein BRAFLDRAFT_67243 [Branchiostoma floridae] | 7.0e-08 |
| pfu_aug2.0_3824.1_15867.t1 | gi|533133265|ref|XP_005381624.1| | PREDICTED: lactadherin isoform X7 [Chinchilla lanigera] | 1.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_3824.1_15867.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3824.1_15867.t1 atgtgcatttcagaatgtcaggctgtagggaaatgctggacagtgaactacaatttggaccatttgtcatgtgaaatgaa cattgacgccgatcagtcgaacttggttaatgatgctgactttgtatttgtcgacatagattcggcggacaaggactgtg gatctgtcatatgtgaagaaacccaggtttgtgtggagtttaaagacaactcaaaaagatgtatacatgcatcatcaggt caaggctcgtgttacacagaaacttacataggatcagaggccagtctgacttggtcgtccttgtatccaggctacgaaaa tccggctctggacggaagtagtgcgtggtcaccagctgataatctgcaaaacactgaccagtggctacaggttttccagg gtaatgttgacgacagtaatgctgtttctaactattttgatcaaacaatacaagcaacatccctgaagctcaaaccgctg acttggaacgaacatatctgtattagaattgattttcttggctgctga |
|
Protein
| Protein ID | pfu_aug2.0_3824.1_15867.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3824.1_15867.t1 MCISECQAVGKCWTVNYNLDHLSCEMNIDADQSNLVNDADFVFVDIDSADKDCGSVICEETQVCVEFKDNSKRCIHASSG QGSCYTETYIGSEASLTWSSLYPGYENPALDGSSAWSPADNLQNTDQWLQVFQGNVDDSNAVSNYFDQTIQATSLKLKPL TWNEHICIRIDFLGC |
|