Gene
| Gene Model ID | pfu_aug2.0_3829.1_32561 |
|---|---|
| Locus | scaffold3829.1 : 9956 ... 10992 : + |
| To GenomeBrowser | scaffold3829.1:9956..10992 |
| Genes list of scaffold | scaffold3829.1 |
| Synonym | pfu_aug1.0_2055.1_15695 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3829.1_32561.t1 | 2 | 1 | C1q | 48 | 61 | 4.4e-18 | 65.5 | 1.3 | 6500.0 | -3.0 |
| pfu_aug2.0_3829.1_32561.t1 | 2 | 2 | C1q | 84 | 205 | 4.4e-18 | 65.5 | 1.0e-21 | 5.2e-18 | 65.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3829.1_32561.t1 | gi|597788335|ref|XP_007257588.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 3-like [Astyanax mexicanus] | 7.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_3829.1_32561.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3829.1_32561.t1 atgttatttcaaaccattttcatcgttttcttctgcgtcgcgtacaaatttcaggaattacagaccgaattcattgatga aaaagatttggagcacaaaatttccaaagtagaaaaagtgaatcaagtacttcgaaattctctaaaataccaggaagagt tgtggggcaatctacaacgaaatctgaaggatagacttcattcatcacataaaaggcaattaccaggtgtagcgtgtgaa aaaccagtcgtattttcgactcgcctctccaagaacttgtacccccttggcaaaaatcagattattacttacgacgatgt gcttaccaatgtggaaggtggatatgacaaggttaccggcattttcgaggcaccatttgctggcctgtaccagttgatag caacaatgtggtcaaacgatggctaccaagtggacatagaaatgattcacaatggaactgatgtctgctacgctaaatca acatctaagaatcagtctatgagcatgtgtgctagtgttatatccatgcaggaaaacggtcgggtgtgggtcaggcatct caacaacataggcaactacgcttatgggaacctctacgccactttttcgggtcataagataatgtag |
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Protein
| Protein ID | pfu_aug2.0_3829.1_32561.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3829.1_32561.t1 MLFQTIFIVFFCVAYKFQELQTEFIDEKDLEHKISKVEKVNQVLRNSLKYQEELWGNLQRNLKDRLHSSHKRQLPGVACE KPVVFSTRLSKNLYPLGKNQIITYDDVLTNVEGGYDKVTGIFEAPFAGLYQLIATMWSNDGYQVDIEMIHNGTDVCYAKS TSKNQSMSMCASVISMQENGRVWVRHLNNIGNYAYGNLYATFSGHKIM |
|