Gene
| Gene Model ID | pfu_aug2.0_383.1_10693 |
|---|---|
| Locus | scaffold383.1 : 2442 ... 18101 : + |
| To GenomeBrowser | scaffold383.1:2442..18101 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | pfu_aug1.0_1316.1_51270 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10693.t1 | 4 | 1 | Neur_chan_LBD | 27 | 120 | 0.0 | 310.6 | 9.3e-24 | 6.9e-20 | 71.1 |
| pfu_aug2.0_383.1_10693.t1 | 4 | 2 | Neur_chan_LBD | 133 | 330 | 0.0 | 310.6 | 3.4e-38 | 2.5e-34 | 118.3 |
| pfu_aug2.0_383.1_10693.t1 | 3 | 1 | Neur_chan_memb | 339 | 420 | 2.1e-23 | 83.4 | 8.4e-16 | 6.2e-12 | 45.9 |
| pfu_aug2.0_383.1_10693.t1 | 4 | 3 | Neur_chan_LBD | 442 | 479 | 0.0 | 310.6 | 4.7e-07 | 0.0035 | 16.5 |
| pfu_aug2.0_383.1_10693.t1 | 4 | 4 | Neur_chan_LBD | 520 | 717 | 0.0 | 310.6 | 9.0e-37 | 6.6e-33 | 113.6 |
| pfu_aug2.0_383.1_10693.t1 | 3 | 2 | Neur_chan_memb | 726 | 810 | 2.1e-23 | 83.4 | 2.0e-15 | 1.5e-11 | 44.6 |
| pfu_aug2.0_383.1_10693.t1 | 3 | 3 | Neur_chan_memb | 864 | 895 | 2.1e-23 | 83.4 | 0.041 | 300.0 | 1.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10693.t1 | gi|507950977|ref|XP_004683740.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-10 [Condylura cristata] | 4.00001e-40 |
| pfu_aug2.0_383.1_10693.t1 | gi|676426446|ref|XP_009044626.1| | hypothetical protein LOTGIDRAFT_135769 [Lottia gigantea] | 5.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10693.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10693.t1 atgttgagtctatgtgcactttgttggcagattttgctgtttccattcgtacaaagcaagacaatccaatcagcgtatag tttatatgatgaccttattacaaactacactgcggacatccgacccgtcaacgatgatacagaagttatgtatgtgaata catcattttatttgaacgccattttgaacctggacgaaccgacaggccagctgacaacagcattgtccataagcttggta tggaatgacgtactactcacgtggaaccctaatgattacgaaggacgatataaaatggaggtttctaaaacaaagatctg gactccaaatttggtgctcatttctccaagtcaaaaaactcagtcactgggtaaggatagcgacaagtcagcttatgatt tatacgatgatgttttcgctaattatacatctgacataagacctgtccacaatgatagtgaagttatgcatgtgtatgta agtgctcatcttgtattggtactccgtgtagatgaagtgtcaggcgaggtgtcaatggggttgtctattgcaatatattg ggaagataagaaactaaggtgggatccatggaagtatgaaatgagatcgaaaattgaagtagatgtaagtaaaatatgga aaccgccgctaaaactgacttcaccaagtcaaaaggcagagaggatagttaaagacggggacatggccattgtgtacagt cacgggcatgttttccttggatttaatgacatattccacagctcgtgtccgattcaaactacttactttccctttgacat gcagaaatgtgctgtttggttctctgccccagaatatgggcaacgtttgaagtacattgctgtctcgcctgttctgaata cggaatattacttcgaaaatgcaatatggtcattggaaaaaactgagttgacgtcatttacgatgggagataatgaaaat ctggtatgcggtgtccatctaagaaggcgggcgactttccacatactgaacctgcttacacctatcgtcattctcatgct tctgaactccatggtgtttgtcctcccggtggagagtggagaacgcgtagggttttctgtgacgcttttgttgtctgtcg cagtttacatgacaattatttctgataaactccccaacgcatcaaagcctacccccatattaatgtacgttctagttgct tacctagcacagtcatccctcatttgtttgacaaccctacttggtttgagattttattttgacgacgacgatgagcctat catcactcctgttgtgttcggcataaatatacagtcggcttataatctatacaatgatctcctttccaattacacgtcgg atatcagacctgttcacaataacagtgaacatcaaaatgtgttcgttggcgtgtatctgtcaaacataagatccatggtg tgttatgacaaaagagatgattttggattcaacatagtaaatttcccctggcttgacgttgatgtaactagattaccgtc ctatggaattctgagtataaatatacagtcagcttacgatttatacgatggtcttctttccaattattctaccgatatca gaccagtgcataatgatagcgaatttcaaaatctttacgttgacgtttacatgtataatattaaccgcctggacgaggtt cttggtgaactggcagtagtaatgtcattacgtgttcactggtatgatgtcaagttacaatggaatcctatggactacga agggagatataaaatagaggtagacgtaacaaaaatatggagtccgtcgttgaagcttacatctccgagtcaaaaggcag agcaattagcaaaagaaggagacaaagcagtggttttatacgacggacttgtctcgtcagaaatcgtagaaacattctat acttcttgcagtgtccagatagcttactttccttttgactctcagatgtgtgatatatggttttcagctccagcatatgg acatcttctgaaatatatacctgtatcaaaagatatcaatacagacattttctacgtgaatgctgtctgggctgttgtga aaacggaggtgaaaagtgtttcaacgataaatgaagagaacctagtctgtatcatccaccttcaacggcgagcaattttc actgcgctgaatctgttaacaccgatcattatcctaatgttcctgaatagcatggtcttcatacttccggcggagagtgg agaacgcgtaggattttccgtcacgctccttcttgcaattgcagtttacatgacaataatctctgaaaagcttccaaact catccaaaccgacaccggtacttatatatgtgttagtggcatatcttgcacagtcagcatgcatttgcgttaaaaatata tttagtttaaaaatgtacttccgagatgatagtataccggtccccaaagtttggttgtctattcaacgttttgtgaaatg tcatgatcgaaagaacctacaaacaggaaataaaatttcctgtgaagcagaaggaccaacaacacagtctgaagattctc aaaacaaaacattagtagattgtcttgttgatcagagaaagaaaataaccatgacatggaaaaccgtatcaggaacactt gatgctttcttcctcaccttcaatgtggtattgtctttgtttatattcataacgtatctatgtcttgtaatgttacagcc ttttgacgtaaaatccaccaaattgtttaacggatga |
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Protein
| Protein ID | pfu_aug2.0_383.1_10693.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10693.t1 MLSLCALCWQILLFPFVQSKTIQSAYSLYDDLITNYTADIRPVNDDTEVMYVNTSFYLNAILNLDEPTGQLTTALSISLV WNDVLLTWNPNDYEGRYKMEVSKTKIWTPNLVLISPSQKTQSLGKDSDKSAYDLYDDVFANYTSDIRPVHNDSEVMHVYV SAHLVLVLRVDEVSGEVSMGLSIAIYWEDKKLRWDPWKYEMRSKIEVDVSKIWKPPLKLTSPSQKAERIVKDGDMAIVYS HGHVFLGFNDIFHSSCPIQTTYFPFDMQKCAVWFSAPEYGQRLKYIAVSPVLNTEYYFENAIWSLEKTELTSFTMGDNEN LVCGVHLRRRATFHILNLLTPIVILMLLNSMVFVLPVESGERVGFSVTLLLSVAVYMTIISDKLPNASKPTPILMYVLVA YLAQSSLICLTTLLGLRFYFDDDDEPIITPVVFGINIQSAYNLYNDLLSNYTSDIRPVHNNSEHQNVFVGVYLSNIRSMV CYDKRDDFGFNIVNFPWLDVDVTRLPSYGILSINIQSAYDLYDGLLSNYSTDIRPVHNDSEFQNLYVDVYMYNINRLDEV LGELAVVMSLRVHWYDVKLQWNPMDYEGRYKIEVDVTKIWSPSLKLTSPSQKAEQLAKEGDKAVVLYDGLVSSEIVETFY TSCSVQIAYFPFDSQMCDIWFSAPAYGHLLKYIPVSKDINTDIFYVNAVWAVVKTEVKSVSTINEENLVCIIHLQRRAIF TALNLLTPIIILMFLNSMVFILPAESGERVGFSVTLLLAIAVYMTIISEKLPNSSKPTPVLIYVLVAYLAQSACICVKNI FSLKMYFRDDSIPVPKVWLSIQRFVKCHDRKNLQTGNKISCEAEGPTTQSEDSQNKTLVDCLVDQRKKITMTWKTVSGTL DAFFLTFNVVLSLFIFITYLCLVMLQPFDVKSTKLFNG |
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