Gene
| Gene Model ID | pfu_aug2.0_383.1_10694 |
|---|---|
| Locus | scaffold383.1 : 21766 ... 23219 : + |
| To GenomeBrowser | scaffold383.1:21766..23219 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | pfu_aug1.0_1316.1_51271 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-6-like | GO:0006810 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10694.t1 | 1 | 1 | Neur_chan_LBD | 29 | 225 | 1.6e-31 | 109.1 | 5.1e-35 | 2.5e-31 | 108.5 |
| pfu_aug2.0_383.1_10694.t1 | 2 | 1 | Neur_chan_memb | 234 | 361 | 9.6e-17 | 61.6 | 3.5e-19 | 1.7e-15 | 57.5 |
| pfu_aug2.0_383.1_10694.t1 | 2 | 2 | Neur_chan_memb | 354 | 408 | 9.6e-17 | 61.6 | 4.5e-05 | 0.22 | 11.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10694.t1 | gi|524874412|ref|XP_005093941.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-6-like [Aplysia californica] | 2.99878e-43 |
| pfu_aug2.0_383.1_10694.t1 | gi|260801717|ref|XP_002595742.1| | hypothetical protein BRAFLDRAFT_64870 [Branchiostoma floridae] | 2.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10694.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10694.t1 atggatttatttaggattatgatgttcgtcttccccatccctgcggtgtacatgaatggagtcaacattaaatcagcact tgacctccataaatacctgcttgcaaactactctactgacatccgacctgtccacagtgacagtcaacctctggatttac atgtatatgcctcacttgttcaaattttccgcttggacgaactttccggtgagctagtttcaagtttggtgttatcattc acttggtttgacgaaagtttgaaatgggatccagctgatttcgagggcaggtacaaaacagagattgacgttatgaagat ttggagaccagccttaaaattaatgtcgccaagtcagaaaacagaacgactgggcaaacagggcgatatagctgtgataa cttcttatggatctgttgttatgtcacttagcgatatattctttacttcctgtgtggttcgtatcacattctttcctttt gacatacagatatgtgacctatggttcgctattccagaatatggcaaacaaataacatttactcctaactcacctgaaat aggaagatcatttttctttgaaaaccctatttggaatgttaaaaagacgactttgaaatctgtcgccatggaatataata acaatcttgtatgcagtatcgtattagaaagacgggcaacattttacatccttaatcttttaactcctatcataatactc atgattttgaacagcatggtatttgcacttccggcggatagcggagaacgcgtagggttttccgttactctacttctatc tattactgtttacatgacaattatatcggacaagatcccaaattcctccaaaccttcgcctatcctgacctacgtactgg tatcatactttggacagtcagctttgatatgcttaaatactattctaagtttgaggatgcattcccatagcaacaaagac cctgtgccaccactgttatccaatgttgtacgcatgttaagatgctgtatgtgttcttgtcgaaataaagaacaagaaaa caagatcaaacattgtgaaaatgaacaaactgaaacaatttctaaccgtgaaaacaaggtagaaatctgcaacaaaaatg aaccgcaaagtgaaataacgtggaaaaacgtagcttcttctttcgacaacatctttcttatttcgaatatatgcatatgt ttcctcatagctgttgtttatttctgcctcgttttattttatcgtacctga |
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Protein
| Protein ID | pfu_aug2.0_383.1_10694.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10694.t1 MDLFRIMMFVFPIPAVYMNGVNIKSALDLHKYLLANYSTDIRPVHSDSQPLDLHVYASLVQIFRLDELSGELVSSLVLSF TWFDESLKWDPADFEGRYKTEIDVMKIWRPALKLMSPSQKTERLGKQGDIAVITSYGSVVMSLSDIFFTSCVVRITFFPF DIQICDLWFAIPEYGKQITFTPNSPEIGRSFFFENPIWNVKKTTLKSVAMEYNNNLVCSIVLERRATFYILNLLTPIIIL MILNSMVFALPADSGERVGFSVTLLLSITVYMTIISDKIPNSSKPSPILTYVLVSYFGQSALICLNTILSLRMHSHSNKD PVPPLLSNVVRMLRCCMCSCRNKEQENKIKHCENEQTETISNRENKVEICNKNEPQSEITWKNVASSFDNIFLISNICIC FLIAVVYFCLVLFYRT |
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