Gene
| Gene Model ID | pfu_aug2.0_383.1_10696 |
|---|---|
| Locus | scaffold383.1 : 36226 ... 40097 : + |
| To GenomeBrowser | scaffold383.1:36226..40097 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | pfu_aug1.0_1316.1_51272 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-6-like | GO:0006810 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10696.t1 | 1 | 1 | Neur_chan_LBD | 6 | 154 | 4.6e-23 | 81.5 | 1.7e-26 | 6.4e-23 | 81.0 |
| pfu_aug2.0_383.1_10696.t1 | 2 | 1 | Neur_chan_memb | 163 | 258 | 2.0e-14 | 54.0 | 4.2e-16 | 1.6e-12 | 47.8 |
| pfu_aug2.0_383.1_10696.t1 | 2 | 2 | Neur_chan_memb | 299 | 339 | 2.0e-14 | 54.0 | 0.0001 | 0.38 | 10.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10696.t1 | gi|156379712|ref|XP_001631600.1| | predicted protein [Nematostella vectensis] | 4.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10696.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10696.t1 atggtctcaggtatttcattatcatttacttggtttgacgtaaacctaaggtgggacccagcagaattcgaggggaggaa cagaatggagatggacgttacaaagatatggaaaccagcgttaaaattaatgtccccgagtcaagaaagagatcgacttg gtaaagaatttgaccttgctgttgtttactcacatggaatggttaccatgacagtccatgatatattcttcacatcttgt gcggttcaaattacatattttccatttgatacacaactttgtgacatgtggttcgcatttccggaatatggtaaacttct tacttacatccctaattcaccagttatggacacatcttttttcttcgagaatcctatttggaaggtaaaagagacaaaag ttaaatctgtcgataccggatacaactataaccttgtatgtgaaatactactagaaagacgtgctacattttatgcccta aatcttttgacacctatcttgatactgatggttttgaacagcatggtctttgcacttccggcggagagtggagaacgcgt agggttttccgttaccttactcctttccgtagctgtttacatgactattatatcggacaagcttccgaattcctctaaac cttctcccattctgacgtacgtcctggtcgcctatctagcacagtcagcttttatttgcatcaagaccatacttagtttg aggatgcattcacatagcgaggaagattctgtgtcaccaatgttagccagagttgttcgcgttttaagatgttgttggtg ttcttgctgctcgaagaaagacagcgaaagtggcaaaaagtatgaaattgctgtcatttcgaacgaaaatggatttggac atgaaagtaaggatgaaaacatcgtcaatcacacaacacaaaatgaaattacatggaggaaagtggcttctacctttgac atcatctttcttatttcaaatatattactttgtgtcattatagctgtggtttatttctgtctcgttttaatgcgaccttg gtaa |
|
Protein
| Protein ID | pfu_aug2.0_383.1_10696.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10696.t1 MVSGISLSFTWFDVNLRWDPAEFEGRNRMEMDVTKIWKPALKLMSPSQERDRLGKEFDLAVVYSHGMVTMTVHDIFFTSC AVQITYFPFDTQLCDMWFAFPEYGKLLTYIPNSPVMDTSFFFENPIWKVKETKVKSVDTGYNYNLVCEILLERRATFYAL NLLTPILILMVLNSMVFALPAESGERVGFSVTLLLSVAVYMTIISDKLPNSSKPSPILTYVLVAYLAQSAFICIKTILSL RMHSHSEEDSVSPMLARVVRVLRCCWCSCCSKKDSESGKKYEIAVISNENGFGHESKDENIVNHTTQNEITWRKVASTFD IIFLISNILLCVIIAVVYFCLVLMRPW |
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