Gene
| Gene Model ID | pfu_aug2.0_383.1_10697 |
|---|---|
| Locus | scaffold383.1 : 42596 ... 45304 : + |
| To GenomeBrowser | scaffold383.1:42596..45304 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | pfu_aug1.0_1316.1_51272 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-6-like | GO:0001818 GO:0006811 GO:0006950 GO:0007154 GO:0009605 GO:0010033 GO:0015276 GO:0019899 GO:0030425 GO:0044456 GO:0044459 GO:0044463 GO:0044700 GO:0044708 GO:0048518 GO:0048583 GO:0050794 GO:0050890 GO:0065008 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10697.t1 | 1 | 1 | Neur_chan_LBD | 35 | 231 | 2.5e-34 | 118.3 | 5.8e-38 | 4.3e-34 | 117.5 |
| pfu_aug2.0_383.1_10697.t1 | 2 | 1 | Neur_chan_memb | 240 | 376 | 2.8e-16 | 60.1 | 6.4e-19 | 4.8e-15 | 56.1 |
| pfu_aug2.0_383.1_10697.t1 | 2 | 2 | Neur_chan_memb | 351 | 416 | 2.8e-16 | 60.1 | 6.7e-06 | 0.05 | 13.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10697.t1 | gi|734595353|ref|XP_010731079.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Larimichthys crocea] | 2.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10697.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10697.t1 atggttagtaccgcagactcccttaagttggtgatcgtccttatttgtcttcatagtactgtaacgtgtgtgaatggaat taatatacagtcagcatttgacctccatgaacacttactgaccaattattctagcgatataagacctgtacataatgaca gtcaacctctcgatatacaagtttttgcctaccttattcaaatcttcaatctggacgaggttgcaggggagctagttaca agcctgtccttaacattcacatggtttgatgaaaatttcaaatgggatcctgctgagtttgagggtagacataaaatgga gtttgacgttacaaaaatttggaggccagcgttaaaacttctttcgccgagtcaacagacagacagactcgggaaggaag gtgacattgccgttgtttacgctatcggaattgttactatgaccatcaacgatatatttttcacctcttgtgcagttcag ataacatattttccttttgacttacagtattgtgatatctggtttgctatcccagaatacgggaatcttcttacatacac gccttatagaagtgaaatggacacatcttttttctttgaaaatcctatttggaaagtgaaaaagacaactttaaaatctg tctcaacgggatataataacaatattgtatgtggtattgtattggaaagacgggcaacattttatgtactaaatcttttg acacctatcataatacttatggttttgaacagcatggtctttgcacttccggcggagagtggagaacgcgtagggttttc cgttaccttacttctttccgttgctgtttacatgactattatatctgataagctgccaaactcctctaagccttctccca ttctgacgtacgtcctggttgcctatctagcacagtcagccctaatttgcattaagaccatactcagtttgaggatgcat tctcatagcgatgacaattctgtgtccaaagtattatctagtgttgtaagaatattaagatgcagcatgtgttcatgtcg atctcatgaagaaaataagaccgacaatcagtgtgaaaacggaataaagttgaaggaaaaatcttcaagcactgaaaaca gaactgaaagcttcgatgacaatactggacaaagtgaaataacatggaaagcggtagcttctacttttgacaaaatcttt ctggtttcgaatatatttatatgtttcatcatagctatcacttatttttgtcttgttctattaaaaccattctga |
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Protein
| Protein ID | pfu_aug2.0_383.1_10697.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10697.t1 MVSTADSLKLVIVLICLHSTVTCVNGINIQSAFDLHEHLLTNYSSDIRPVHNDSQPLDIQVFAYLIQIFNLDEVAGELVT SLSLTFTWFDENFKWDPAEFEGRHKMEFDVTKIWRPALKLLSPSQQTDRLGKEGDIAVVYAIGIVTMTINDIFFTSCAVQ ITYFPFDLQYCDIWFAIPEYGNLLTYTPYRSEMDTSFFFENPIWKVKKTTLKSVSTGYNNNIVCGIVLERRATFYVLNLL TPIIILMVLNSMVFALPAESGERVGFSVTLLLSVAVYMTIISDKLPNSSKPSPILTYVLVAYLAQSALICIKTILSLRMH SHSDDNSVSKVLSSVVRILRCSMCSCRSHEENKTDNQCENGIKLKEKSSSTENRTESFDDNTGQSEITWKAVASTFDKIF LVSNIFICFIIAITYFCLVLLKPF |
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