Gene
| Gene Model ID | pfu_aug2.0_383.1_10698 |
|---|---|
| Locus | scaffold383.1 : 65076 ... 66780 : + |
| To GenomeBrowser | scaffold383.1:65076..66780 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-3 | GO:0003008 GO:0005886 GO:0006812 GO:0007268 GO:0015276 GO:0044425 GO:0050794 GO:0050896 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10698.t1 | 2 | 1 | Neur_chan_LBD | 25 | 170 | 1.3e-34 | 119.3 | 7.5e-35 | 5.6e-31 | 107.3 |
| pfu_aug2.0_383.1_10698.t1 | 2 | 2 | Neur_chan_LBD | 215 | 285 | 1.3e-34 | 119.3 | 4.3e-05 | 0.32 | 10.1 |
| pfu_aug2.0_383.1_10698.t1 | 2 | 1 | Neur_chan_memb | 294 | 378 | 7.6e-13 | 48.8 | 1.7e-16 | 1.3e-12 | 48.1 |
| pfu_aug2.0_383.1_10698.t1 | 2 | 2 | Neur_chan_memb | 417 | 465 | 7.6e-13 | 48.8 | 0.0063 | 47.0 | 3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10698.t1 | gi|564244570|ref|XP_006261416.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-3 [Alligator mississippiensis] | 1.0e-29 |
| pfu_aug2.0_383.1_10698.t1 | gi|557289272|ref|XP_006027282.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-3 [Alligator sinensis] | 2.0e-29 |
| pfu_aug2.0_383.1_10698.t1 | gi|641736732|ref|XP_008158999.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-3 [Eptesicus fuscus] | 4.0e-29 |
| pfu_aug2.0_383.1_10698.t1 | gi|676426443|ref|XP_009044625.1| | hypothetical protein LOTGIDRAFT_83337, partial [Lottia gigantea] | 1.0e-28 |
| pfu_aug2.0_383.1_10698.t1 | gi|402875027|ref|XP_003901322.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-3 [Papio anubis] | 3.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10698.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10698.t1 atgaagctacatgtaatcattccattcctaacgatcatcataacttatgtcgagggagataatccatttgaattacataa gaatcttcttacaaactacacaagtgatgcaaggcctgtacataatgacagtgtagtgacaaatattcgagtttcggtag cgctattatcattgcgacgtttagatgagatcacaggggaactagtcacaggcttgcttttttacatgcaatggactgat gccttcctcaaatgggatccctctgactatggcggcagaaaatatacacagatagacgtcactaagatctggagaccagc tttgcaattattttccccaagtgaaaaaagcatccgtcttggtagaagcggggacaaagctattgtttataacggaggag gagtctcgatgcaagtgaatgaaatattctacacatcgtgcatagttcagattttgtattatccatttgactcccaccga tgctatatttggttctcaagtccagaatattttgatcgcctcaagtttcatcccgtattaccaacattggccatgtccat gtatgcagagcatgcattatgggaaatagaaaagacagctttttatgacttttcaaaaagtggagccgttgatttcttga ttttgtattatccatttgactcccaccgatgctatatttggttctcaagtccagaatattttgatcgcctcaagtttcat cccgtattaccaacattggccatgtccatgtatgcagagcatgcattatgggaaatagaaaagacagctttttatgactt ttcaaaaagtggagccgttgatttcttggtatgtgaaattcatcttagaagacgagcagcattctctgtccttaatatgc tgattccaatagtgattcttatgtttctgaacagcatggtctttgcacttcctgcagagagcggtgaacgtgtaggattt tctgtaacaatactactgtctatcgcagtttacatgtccataatttcagataaacttccaaactcctcaaagcccactcc aatattgatgtacgttttgggatcttatcttactcagtctgccataatttgtgttacaaccattgcaacactgagaatgt attattccgacaaagaggaacccataactcccattatattgtgcgttgttcgtgcgttgaggtgtaaatctgacagatca ttaaaagcaagaaggaagagtggtgacagctatttcaaacaggatgaagattgttcagaagcacaaagtcatggacaaaa tgagaacaatataagcaggagatctgtcatttcttggatagacgtgtccaaaacatttgataaggttttcctaatattca acggaatattgtgtttttctatagctattgtttatctatgtctcattattatccaacctttcgacaatgaatga |
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Protein
| Protein ID | pfu_aug2.0_383.1_10698.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10698.t1 MKLHVIIPFLTIIITYVEGDNPFELHKNLLTNYTSDARPVHNDSVVTNIRVSVALLSLRRLDEITGELVTGLLFYMQWTD AFLKWDPSDYGGRKYTQIDVTKIWRPALQLFSPSEKSIRLGRSGDKAIVYNGGGVSMQVNEIFYTSCIVQILYYPFDSHR CYIWFSSPEYFDRLKFHPVLPTLAMSMYAEHALWEIEKTAFYDFSKSGAVDFLILYYPFDSHRCYIWFSSPEYFDRLKFH PVLPTLAMSMYAEHALWEIEKTAFYDFSKSGAVDFLVCEIHLRRRAAFSVLNMLIPIVILMFLNSMVFALPAESGERVGF SVTILLSIAVYMSIISDKLPNSSKPTPILMYVLGSYLTQSAIICVTTIATLRMYYSDKEEPITPIILCVVRALRCKSDRS LKARRKSGDSYFKQDEDCSEAQSHGQNENNISRRSVISWIDVSKTFDKVFLIFNGILCFSIAIVYLCLIIIQPFDNE |
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