Gene
| Gene Model ID | pfu_aug2.0_383.1_10702 |
|---|---|
| Locus | scaffold383.1 : 115046 ... 133617 : + |
| To GenomeBrowser | scaffold383.1:115046..133617 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | pfu_aug1.0_1316.1_51278 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-dependent rna helicase dhx29 | GO:0008026 GO:0010467 GO:0016282 GO:0043024 GO:0043231 GO:0044238 GO:0044260 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10702.t1 | 1 | 1 | Helicase_C | 729 | 819 | 1.7e-12 | 46.9 | 2.5e-15 | 3.4e-12 | 46.0 |
| pfu_aug2.0_383.1_10702.t1 | 1 | 1 | HA2 | 883 | 971 | 7.5e-17 | 61.2 | 1.9e-19 | 2.5e-16 | 59.5 |
| pfu_aug2.0_383.1_10702.t1 | 1 | 1 | OB_NTP_bind | 1041 | 1147 | 2.1e-16 | 59.7 | 5.0e-19 | 6.7e-16 | 58.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10702.t1 | gi|578810445|ref|XP_006714716.1| | PREDICTED: ATP-dependent RNA helicase DHX29 isoform X1 [Homo sapiens] | 0.0 |
| pfu_aug2.0_383.1_10702.t1 | gi|119575310|gb|EAW54915.1| | DEAH (Asp-Glu-Ala-His) box polypeptide 29, isoform CRA_a [Homo sapiens] | 0.0 |
| pfu_aug2.0_383.1_10702.t1 | gi|5102733|emb|CAB45191.1| | hypothetical protein, similar to (AC007017) putative RNA helicase A [Arabidopsis thaliana] [Homo sapiens] | 0.0 |
| pfu_aug2.0_383.1_10702.t1 | gi|21740289|emb|CAD39154.1| | hypothetical protein [Homo sapiens] | 0.0 |
| pfu_aug2.0_383.1_10702.t1 | gi|667272391|ref|XP_008571314.1| | PREDICTED: ATP-dependent RNA helicase DHX29 isoform X2 [Galeopterus variegatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10702.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10702.t1 atgtgtatactactcacaggaaagaagacttattcactaccagcatcatcatctaaacaaacagatgacaaggaaattgg tccaaagatttctgtgcccctggatttagaacaagatttaattgaattgatacaagcagagcacacagagagaacaaaat gcaaagatctgtcaaagcgtatcactgtcaaaaaactaacagacatgtacaccagcctgtcgcaggcgggattctctcag tctcagatagagacatgtatgaacaacacggtgatgtatggaggtgatcttatagacgccttggattggttctgccttaa tctacctaatgagaaactgccatctggattttccactgcccttgaaaaagaagaagagaagattagacccaaatttgatg cacaactccagcaaaatgttaacctaccagccccatctgtaaaacttacagaaatcaaagctaaagaaacagagaaaaaa gctccggaaaaggtggtaaacatgaaggactggatcatgcagtatgctgaagtagaatctgatgaagatgatgacgatga attaaaagatgtcacaaacaaagaagaaaatgatcctaatgagcagtacctagagtttacggccaagttgttagatgcca aagcagctgcttcacaagccaagtcacacggaaacaaagacaaacagaaggaattgtctaagattatcagggaacttata caaagaatggacacacttgagaaacatccaaagtttaatcctcaagtgaaaatcaatgacattgacagtgaaaaatcaga taaagttcctacacctgtggacgaaattagtgattctatacttcctgatagctttgcagaggaaagtgcctcagatattg cacagggtgtgtctgttaccatggagatggagtcacatgatcaggaggaggaagatgatgaatgttcaggatttgcttta tttgaacagatggcatctgtaccagaaccagaggaaaagaaaccaaagagatctgattttgatgtgaggaattttgagta cactcgtcagcagtggacggggaagtctcccaagcagttcctgatagattggtgtcgtaaacataagtgtgaagcaccta agtatgagaaagtacatgtcatgggaaacttatggaggtcaaagacagttaaagtttacagatgctcaacacctaggatc tactttagctctatacatacagaagctcaacatctaggatttactctagctctatacaatcagtgtaaaggacagtcact ccatcagctgttaccccctccttatagaactgtctggatggaatggcaagatgccgaaaaggcagcagctaagaaagaaa aagtggaggaaaacaagccgagagatcagtacattaccaggttaatgaagaagcttcagatcagtgaaaaacaatcaaac tcagatggcagatgtgacgacgatggcactctggaatcatgggaagactttgaagaagaggaagtttcagatattggcaa taaagctagtcaacagaaggtagtaaaaccgtctcacagaccgtctaatcgctgcctggatggacgtgcgttatcagata tgtacaagcaacatcagaagtcggactgctacacaagacttctgaaaacccgagaatctctgccagtgtatcaacacaaa gacggtataatgagggcgataagtgataacagagtggtggttatagcaggagagacggggagtggtaaaagtacacagat acctcagtttgtgttagagattcatgaaagaagtgtgcagtcagacttcctgatggtcattctgaagagattacttgacc agaggtcagatctcaaggttatcttgatgagtgccacactggacagtgagaaattctcctcatattttcaccgttgtcca gtagtcaatattcctgggcgaacatttcctgtacaggtatttcatgtagaggatatcatagagaaaacaggttttgtgct agaccatgattcaccatacgctttcagacctgaacagcttatcaaggaggagcattccagtatttcagtgacagggaggg gtggggagcagactaaaacagacgtatactggaccacacagaatattagcaggattgatcaggacttgttagtgtacata gataaggattccgagttcagtgacatggaggggtatcagattctggccctacattctgtgctgtcttcctctgaccaatc agctgcctttgttactcctccaccaggtgtcagaaaggttgtcatagcaacaaatatagcagaaacaggaattacaatac cagatgtggtgtttgtaattgatgcaggaaaagtcaaagaaaacagatacatggagagtagtcagatgagtgcattacgt gaggtgtttatcagtaaggccagtgccaagcagaggcagggtagggctggcagagtacgggaaggggtgtgtctcagact ttatacaaaggaaaagtatgattctctacatgccttcactacaccagagatacagagggtacctctagaagaactctgtc tacatatcatgaaatgtaatcttggtgatcctgaagtattcctgtctgctgcccttgaccctccaaggtcacaggtcatc tccagggcaatggccttattatatgaagttggagcatgtagtggaggtgcgaccttgacccctctaggtcatcacctggc cactctacctgtaaatgtccggataggcaagatgcttctttttggtgcaatatttggttatttagaacctgtggctgtta ttgctgctgccatgacaaccaagtctccgttcgtggcccctctacaaaagttggacctggcccagtctatgaagatgtcc atggctgcagcctgttctgaccatctgactgtgtatagggcctatgttggatggaagttagctcagaaaggggcaaaaag tcatgaacaccagttctgtgccaaacattttcttaaaaggaataccttactggaaatagagaatttgaagtgggacctga tcaaacttgtagagtctataggattctcagatgataaaagctctggaaaaaaggatgcgccagagaatctctacatcaga aattctgaggccacggaaatcccagacctcgaacagaacatggtcgccatggtgaaggctgtggtagcagctgggttgta tcctaacgttgccaaggtaacgtatgatgcccctgtggatgccaaggccaatcccagtaagaatgtatgtgtaggggaga cagcacaaggcccggccaatgtacacccctcatctgttaacaggaacctggctactaatggctggctggcatatcaggaa aaggtgacaacaagtaaagtatacataagggaatgcacccttgtttctccgttttctttaatgatgtttggtggtgacat acatgtagagcacctgtcacagtgtgtcgtcatagatcaaagaataaaattcaagacaaatgcaagaacaggtgtactat tcaaagaactgaggaaacttttatcatctctgttacaagaaaaactacaaaaacccagtctctcacttaaagatgataag ataataaatgttattcacaaactactacagatagaaggcagaaaatctagatga |
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Protein
| Protein ID | pfu_aug2.0_383.1_10702.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10702.t1 MCILLTGKKTYSLPASSSKQTDDKEIGPKISVPLDLEQDLIELIQAEHTERTKCKDLSKRITVKKLTDMYTSLSQAGFSQ SQIETCMNNTVMYGGDLIDALDWFCLNLPNEKLPSGFSTALEKEEEKIRPKFDAQLQQNVNLPAPSVKLTEIKAKETEKK APEKVVNMKDWIMQYAEVESDEDDDDELKDVTNKEENDPNEQYLEFTAKLLDAKAAASQAKSHGNKDKQKELSKIIRELI QRMDTLEKHPKFNPQVKINDIDSEKSDKVPTPVDEISDSILPDSFAEESASDIAQGVSVTMEMESHDQEEEDDECSGFAL FEQMASVPEPEEKKPKRSDFDVRNFEYTRQQWTGKSPKQFLIDWCRKHKCEAPKYEKVHVMGNLWRSKTVKVYRCSTPRI YFSSIHTEAQHLGFTLALYNQCKGQSLHQLLPPPYRTVWMEWQDAEKAAAKKEKVEENKPRDQYITRLMKKLQISEKQSN SDGRCDDDGTLESWEDFEEEEVSDIGNKASQQKVVKPSHRPSNRCLDGRALSDMYKQHQKSDCYTRLLKTRESLPVYQHK DGIMRAISDNRVVVIAGETGSGKSTQIPQFVLEIHERSVQSDFLMVILKRLLDQRSDLKVILMSATLDSEKFSSYFHRCP VVNIPGRTFPVQVFHVEDIIEKTGFVLDHDSPYAFRPEQLIKEEHSSISVTGRGGEQTKTDVYWTTQNISRIDQDLLVYI DKDSEFSDMEGYQILALHSVLSSSDQSAAFVTPPPGVRKVVIATNIAETGITIPDVVFVIDAGKVKENRYMESSQMSALR EVFISKASAKQRQGRAGRVREGVCLRLYTKEKYDSLHAFTTPEIQRVPLEELCLHIMKCNLGDPEVFLSAALDPPRSQVI SRAMALLYEVGACSGGATLTPLGHHLATLPVNVRIGKMLLFGAIFGYLEPVAVIAAAMTTKSPFVAPLQKLDLAQSMKMS MAAACSDHLTVYRAYVGWKLAQKGAKSHEHQFCAKHFLKRNTLLEIENLKWDLIKLVESIGFSDDKSSGKKDAPENLYIR NSEATEIPDLEQNMVAMVKAVVAAGLYPNVAKVTYDAPVDAKANPSKNVCVGETAQGPANVHPSSVNRNLATNGWLAYQE KVTTSKVYIRECTLVSPFSLMMFGGDIHVEHLSQCVVIDQRIKFKTNARTGVLFKELRKLLSSLLQEKLQKPSLSLKDDK IINVIHKLLQIEGRKSR |
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