Gene
| Gene Model ID | pfu_aug2.0_383.1_10703 |
|---|---|
| Locus | scaffold383.1 : 143335 ... 149025 : - |
| To GenomeBrowser | scaffold383.1:143335..149025 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | pfu_aug1.0_1316.1_51279 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-7-like | GO:0006810 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10703.t1 | 2 | 1 | Neur_chan_LBD | 34 | 230 | 0.0 | 240.6 | 4.7e-36 | 2.3e-32 | 111.9 |
| pfu_aug2.0_383.1_10703.t1 | 3 | 1 | Neur_chan_memb | 240 | 332 | 5.9e-27 | 95.0 | 1.2e-15 | 5.9e-12 | 45.9 |
| pfu_aug2.0_383.1_10703.t1 | 2 | 2 | Neur_chan_LBD | 390 | 592 | 0.0 | 240.6 | 8.29569e-43 | 4.1e-39 | 133.9 |
| pfu_aug2.0_383.1_10703.t1 | 3 | 2 | Neur_chan_memb | 603 | 728 | 5.9e-27 | 95.0 | 2.0e-19 | 9.8e-16 | 58.3 |
| pfu_aug2.0_383.1_10703.t1 | 3 | 3 | Neur_chan_memb | 726 | 758 | 5.9e-27 | 95.0 | 0.049 | 240.0 | 1.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10703.t1 | gi|525313823|ref|NP_001265890.1| | neuronal acetylcholine receptor subunit alpha-7-like precursor [Ciona intestinalis] | 7.9874e-44 |
| pfu_aug2.0_383.1_10703.t1 | gi|742084269|ref|XP_010874097.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-7-like [Esox lucius] | 1.99965e-42 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10703.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10703.t1 atgggaattgcgatacagataagttttatcttcttactattaatatttctttcaaacgcatcaactccgggtggaactaa tatcagatctgcttttgatctttatgataaattgttgacaaactactcaaaagacatcagacctgtgcacaatgagaacg aaaagctcatagtcaatctgactgcaatcctgtactctgtagtcagcctggatgaagtttctggggaacttgttgttaac cttggattttacatgaaatggtttgatgtaagtttgacgtggaatttacacgaatacgagaatagaacaagaatggaaat agatgtaacccgtatctggagaccagcactgcagttgtattcaccaattcaaatgtcgacaaggcttggaaaggaagagg ataaagctgtagtcaacaatcagggtttggtatcattgtttataaatgacatttttcaaactatatgctttgttgatata tatcattttccattcgataaacaaatatgtgacatatggtttggaatgaaagaatatccaaatcttctcagcattgtacc tacagcctcaacaatggatacatcagtgatatttgaaaactctaactggaagatagaaagcaccggcttgtatagccttc aatttaactcacacgataaccttatatgtagaattttattgaagagacgaccagctttttacgttctaacaatgttagcc ccgttactgacccttatgctacttaacagtgtagtgttccttctcccagcagagtgtggagaacgtgtgggtttctcagt aacgttgttgttatcgactgctgtgtatatgaccattatatctgacaagcttccaagctcctccgagccttgtcctgtgt tagcatacgcccttcttgcttacatagctcagtcatcattcatatgcattgaaacaatggtcggtttgaggatttacttc aacgatgacgaaaagcctattcctccagcattatcacatgttgtgagctgcttaacgtttaacaacatacataatggacg gatacttcaccgcaatataatcgccaaaacgtattacacgatgaataaacatacttttttcttttttggacttctatgtg caatatgtctcaataaatcaggatgcaagacgatccaatccgcatataatttgtacaatgatttattggccaattataca tcagatatcagacctgttgacgatgacaacgatattcttaatgtgaaaacaactatgtacctcaacagtattttagaact ggacgaaccaagaggacaacttaccacggctttatccatccatttgatgtggaatgacatacaattgagttggaatccag ctgactacgaatatcgcggcaaaattgagatttctaagagacatatatggactcctgaattaatgatgatatcacctagt aagtcaacagaaaagatcggtaaagacaacgataaagttctgattcacagttacggtggaagtcatcagtttctatccat gacaatcattgatatattttatactatatgtgacattgatgttacgtactttccatttgatacacagacttgttcaataa gattttcacagtatgactatggagacaggatccgatatgttatttcagaagacgcgatgaatacagattacttttctgag aatggtgtttggagagttgagaaaacagaggtatatactgaaacaaggaacgaaatatattatgaactcgtaggaaaaat acacatgaaaagacgatcaacatattactgcttaaatcttctcggccctatcctgatattgatgcttctaaactgcttgg tgtttttgttacccgctgagagcggagaacgcgttggttttgcagtcacaattcttcttgccatagctgtatatatgaca atcatagcagacaaattaccaaatacatccaaaccagtctcagttcttacgttcattcttgcaacatacatggctcagtc ggcgatgatatgtgtctgtacaatatttggcatacggttagtttttcgagacgaatcgaagcctgtttcgaagatatgga gcatgttctttctgattatgaaatgtggtagatttcgaatcgcaaatgaggatgatgagcacgaagatgtcaagattgat acgaaagagcaatgtcaccaggaaatcacctggaagacagttgctgaaatgtatgatactgtggtcctctcgattaatct cttcttttgcttcttcattgccattgtttattttataattgttttgtcaaatatgtag |
|
Protein
| Protein ID | pfu_aug2.0_383.1_10703.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10703.t1 MGIAIQISFIFLLLIFLSNASTPGGTNIRSAFDLYDKLLTNYSKDIRPVHNENEKLIVNLTAILYSVVSLDEVSGELVVN LGFYMKWFDVSLTWNLHEYENRTRMEIDVTRIWRPALQLYSPIQMSTRLGKEEDKAVVNNQGLVSLFINDIFQTICFVDI YHFPFDKQICDIWFGMKEYPNLLSIVPTASTMDTSVIFENSNWKIESTGLYSLQFNSHDNLICRILLKRRPAFYVLTMLA PLLTLMLLNSVVFLLPAECGERVGFSVTLLLSTAVYMTIISDKLPSSSEPCPVLAYALLAYIAQSSFICIETMVGLRIYF NDDEKPIPPALSHVVSCLTFNNIHNGRILHRNIIAKTYYTMNKHTFFFFGLLCAICLNKSGCKTIQSAYNLYNDLLANYT SDIRPVDDDNDILNVKTTMYLNSILELDEPRGQLTTALSIHLMWNDIQLSWNPADYEYRGKIEISKRHIWTPELMMISPS KSTEKIGKDNDKVLIHSYGGSHQFLSMTIIDIFYTICDIDVTYFPFDTQTCSIRFSQYDYGDRIRYVISEDAMNTDYFSE NGVWRVEKTEVYTETRNEIYYELVGKIHMKRRSTYYCLNLLGPILILMLLNCLVFLLPAESGERVGFAVTILLAIAVYMT IIADKLPNTSKPVSVLTFILATYMAQSAMICVCTIFGIRLVFRDESKPVSKIWSMFFLIMKCGRFRIANEDDEHEDVKID TKEQCHQEITWKTVAEMYDTVVLSINLFFCFFIAIVYFIIVLSNM |
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