Gene
| Gene Model ID | pfu_aug2.0_383.1_10710 |
|---|---|
| Locus | scaffold383.1 : 238420 ... 248959 : - |
| To GenomeBrowser | scaffold383.1:238420..248959 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | pfu_aug1.0_1285.1_07876 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| v-type proton atpase subunit c 1 | GO:0005765 GO:0005886 GO:0008553 GO:0015991 GO:0031410 GO:0033180 GO:0045177 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10710.t1 | 3 | 1 | V-ATPase_C | 4 | 66 | 0.0 | 244.6 | 1.3e-23 | 1.9e-19 | 69.8 |
| pfu_aug2.0_383.1_10710.t1 | 3 | 2 | V-ATPase_C | 67 | 155 | 0.0 | 244.6 | 2.20004e-43 | 3.2e-39 | 134.9 |
| pfu_aug2.0_383.1_10710.t1 | 3 | 3 | V-ATPase_C | 154 | 195 | 0.0 | 244.6 | 5.6e-15 | 8.3e-11 | 41.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10710.t1 | gi|676448937|ref|XP_009051892.1| | hypothetical protein LOTGIDRAFT_206255 [Lottia gigantea] | 4.0e-37 |
| pfu_aug2.0_383.1_10710.t1 | gi|148676846|gb|EDL08793.1| | ATPase, H+ transporting, lysosomal V1 subunit C1, isoform CRA_c, partial [Mus musculus] | 7.0e-35 |
| pfu_aug2.0_383.1_10710.t1 | gi|560979945|ref|XP_006212224.1| | PREDICTED: V-type proton ATPase subunit C 1 isoform X2 [Vicugna pacos] | 3.0e-34 |
| pfu_aug2.0_383.1_10710.t1 | gi|298104138|ref|NP_001177134.1| | ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1 [Sus scrofa] | 4.0e-34 |
| pfu_aug2.0_383.1_10710.t1 | gi|585700689|ref|XP_006897234.1| | PREDICTED: V-type proton ATPase subunit C 1-like [Elephantulus edwardii] | 5.0e-34 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10710.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10710.t1 atgacagagttttggttgatctcggcaccgggtgataagagcctacagcaaacatgggacaaactgaatgccgccacaat gaggaacaatatgctgtccaccaactacaagttccctgtcccagatctcaaggttggaacacttgatattttggtgggac tttcagatgacttgggaaaattagatgcatattgtgaaaggggtagcttgttaactagaaacctcggagatatagtgaag aaggatgactttgtattagattcagaatacctacaaactctcattgttgtagtccctagatcgttccaccatgattggca aggaaagtatgagaccctgactgatatgatagtacccaggtcgtcaagggtaatttatgaagatgatgagaattgtttat gttctgtcactctgtttagaagagttgttgatgaattccgacacaaatgtagggaaaacaagtatggtttgccagtgaat ttcctagctgtcttaatacagcctcacaagaaaacgcagcgtagattacgagaggttctaaaccaactatatgcccacct agatacaactgctatgtctcaagttgatgtaagttgtttgttagaaccgtag |
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Protein
| Protein ID | pfu_aug2.0_383.1_10710.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10710.t1 MTEFWLISAPGDKSLQQTWDKLNAATMRNNMLSTNYKFPVPDLKVGTLDILVGLSDDLGKLDAYCERGSLLTRNLGDIVK KDDFVLDSEYLQTLIVVVPRSFHHDWQGKYETLTDMIVPRSSRVIYEDDENCLCSVTLFRRVVDEFRHKCRENKYGLPVN FLAVLIQPHKKTQRRLREVLNQLYAHLDTTAMSQVDVSCLLEP |
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