Gene
| Gene Model ID | pfu_aug2.0_383.1_10713 |
|---|---|
| Locus | scaffold383.1 : 285901 ... 324169 : - |
| To GenomeBrowser | scaffold383.1:285901..324169 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | pfu_aug1.0_1285.1_07879 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mediator of rna polymerase ii transcription subunit 25 | GO:0008134 GO:0048522 GO:0048523 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10713.t1 | 2 | 1 | Med25_VWA | 12 | 124 | 8.2e-32 | 110.0 | 7.9e-33 | 5.9e-29 | 100.7 |
| pfu_aug2.0_383.1_10713.t1 | 2 | 2 | Med25_VWA | 125 | 162 | 8.2e-32 | 110.0 | 0.00024 | 1.8 | 7.5 |
| pfu_aug2.0_383.1_10713.t1 | 3 | 1 | Med25 | 294 | 330 | 0.0 | 187.1 | 1.9 | 14000.0 | -4.5 |
| pfu_aug2.0_383.1_10713.t1 | 3 | 2 | Med25 | 424 | 578 | 0.0 | 187.1 | 0.0 | 0.0 | 187.1 |
| pfu_aug2.0_383.1_10713.t1 | 3 | 3 | Med25 | 692 | 722 | 0.0 | 187.1 | 2.0 | 15000.0 | -5.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10713.t1 | gi|504174928|ref|XP_004597024.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 25 [Ochotona princeps] | 0.0 |
| pfu_aug2.0_383.1_10713.t1 | gi|471395982|ref|XP_004381685.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 25 [Trichechus manatus latirostris] | 8.40779e-45 |
| pfu_aug2.0_383.1_10713.t1 | gi|533200622|ref|XP_005412881.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Chinchilla lanigera] | 9.80909e-45 |
| pfu_aug2.0_383.1_10713.t1 | gi|686759855|ref|XP_009231193.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X1 [Pongo abelii] | 1.96182e-44 |
| pfu_aug2.0_383.1_10713.t1 | gi|533200620|ref|XP_005412880.1| | PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X1 [Chinchilla lanigera] | 1.96182e-44 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10713.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10713.t1 atggtggtgtacgactctttcaaaaatcccctagacgttgtgtttgttattgaagcaactgctaatcttggagcatacat agacgtgctgaaaaaacactacatcattcctacattggagtattacgcatgtaattccagtacatacagctgtacccttt acaatatggtgacattcttttcctttgatatccatcctgatgccacggctagatgttcagatatcaccacaaatatccat gaattcataacatggctagatgatgttccatttactggagggggaagtgatactagcagttacatagcagagggtcttag tacggctcttcatgtgtttgatgaccttgagcaacagcgacgagttaaaggaaaaatcccagcattactgaaactgtacg aagagtcgaccatgccaggtgaccttggtgtacccgccaaagatttcagcaccgacccacgacaccacatactcctacat ggttatcagctacaagaacgagcccacagtcctgtaaatgacgtttcagagccagctcacagccctgccccaggatttgc cgtgcccacctcagcattctcccctgcccctcccccgtcctttgatgactctcagactctgagtggcggattcaaagtac catcatcagcccctacagcaccctccagttcatattccacaaaccaaatgccgtccccattatcaatgtctagtagcatg ccctcaccacaacaagtcaatacacaacagggtatgatacaacaacaaaatgtaggtcaacaacaggggctacaacaaaa tataggacaacagaatctgggtcatcaacaaaatataggtcagcagcagaatatgggtcaacaaagtcatcaacaacaac aactaacacaatcacaacagtttgatcagatgatggcacagcaacaacaacaacaacagatggctcaacaaaatcagcag gcccaacagcagcaagtcatgagtcagcattttggtcaaggtcagcagcagtcaaacgtgacgtcacaaccctcgtctat gaatcctattcactcccagggtaaccttggtaacccacagaatgtcagtctacaacaacaggtcgtatcatcacagatgg gggctatatcagtcggcaatattaactctacaggaatgacccaggttggtaatcaaccaggccagcctatctactccaat ccccagctggtacagaatcaaggaatgccatcggcagagtttgaaggtcagcagaatcaagcagcagcacagatgaaaga cagaaaaataatctggagaggtctgttagagtggcaggagaaagtgaaaccaggtggtccccagcagcctaaggtgtcca gacaattacagtgtcatctgtctataggacacagtgatcctgatattaatgctagtaattggcctaaggagttgatcatg caactcattccccagtctttactcagctctacgcagcttcagcctctgtttaaaaactcccgccaggtggcattccattt tggcagccacaatcttgaagctttgaagaatctgtacaaagtcatgggaacaggatttgcaggatgtgtgcattttccgt caccgagccagtgtgatgtacgagtattgttgttactattcagtaacaaacgtaaagctttcattggtttgatacctaac gaccaaacagcgtttgtacagggaataaggacggtcatttactctcataaaatgaagcaacaaaaacaacagaatatgct acaacaagctgcaggtgcccaaatgccggcatcaaacatgcagtttccagggcaacagccaaatatgctccctcaaggca tgtcacaaaatcagttcaatatgcagcagcagccggccaatacgatgcagaacacagtgatgcagagtcagccacctgga atgtttctgcaaaaacaaataagccagcagaatatggccagacagcaggcagaagtccaacaacaacaaaaactagcaga cgagttatactttggcccaggaccgggccctgggctttataatgcccaccagaggatgcagttacaacatcaacaacaac agaggttgcaaatgcagcagcagcaacaacaacttaatgaacaacaaagacaacaacaaatgacaggacaacaaatcaac aaccagccaatgaacagccagcaacagttaactcagctcctcatgcagcaacatcagaatggtcagcagatacgccagcc acagatgatgatgcagcagcctcgcgggttacctatgggtcaaggtcaacaaggcataatggggtcacaggtcatgagtg ggtcaatgccacagatggcccagccaggaccttcctctggccaatcacagaatctgtttgatgacatggactttctgccc aactag |
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Protein
| Protein ID | pfu_aug2.0_383.1_10713.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10713.t1 MVVYDSFKNPLDVVFVIEATANLGAYIDVLKKHYIIPTLEYYACNSSTYSCTLYNMVTFFSFDIHPDATARCSDITTNIH EFITWLDDVPFTGGGSDTSSYIAEGLSTALHVFDDLEQQRRVKGKIPALLKLYEESTMPGDLGVPAKDFSTDPRHHILLH GYQLQERAHSPVNDVSEPAHSPAPGFAVPTSAFSPAPPPSFDDSQTLSGGFKVPSSAPTAPSSSYSTNQMPSPLSMSSSM PSPQQVNTQQGMIQQQNVGQQQGLQQNIGQQNLGHQQNIGQQQNMGQQSHQQQQLTQSQQFDQMMAQQQQQQQMAQQNQQ AQQQQVMSQHFGQGQQQSNVTSQPSSMNPIHSQGNLGNPQNVSLQQQVVSSQMGAISVGNINSTGMTQVGNQPGQPIYSN PQLVQNQGMPSAEFEGQQNQAAAQMKDRKIIWRGLLEWQEKVKPGGPQQPKVSRQLQCHLSIGHSDPDINASNWPKELIM QLIPQSLLSSTQLQPLFKNSRQVAFHFGSHNLEALKNLYKVMGTGFAGCVHFPSPSQCDVRVLLLLFSNKRKAFIGLIPN DQTAFVQGIRTVIYSHKMKQQKQQNMLQQAAGAQMPASNMQFPGQQPNMLPQGMSQNQFNMQQQPANTMQNTVMQSQPPG MFLQKQISQQNMARQQAEVQQQQKLADELYFGPGPGPGLYNAHQRMQLQHQQQQRLQMQQQQQQLNEQQRQQQMTGQQIN NQPMNSQQQLTQLLMQQHQNGQQIRQPQMMMQQPRGLPMGQGQQGIMGSQVMSGSMPQMAQPGPSSGQSQNLFDDMDFLP N |
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