Gene
| Gene Model ID | pfu_aug2.0_383.1_10717 |
|---|---|
| Locus | scaffold383.1 : 444293 ... 449006 : + |
| To GenomeBrowser | scaffold383.1:444293..449006 |
| Genes list of scaffold | scaffold383.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_383.1_10717.t1 | 2 | 1 | RVT_1 | 196 | 358 | 9.3e-25 | 87.2 | 1.4e-27 | 4.0e-24 | 85.1 |
| pfu_aug2.0_383.1_10717.t1 | 1 | 1 | rve | 382 | 492 | 2.7e-18 | 66.2 | 3.6e-21 | 1.1e-17 | 64.3 |
| pfu_aug2.0_383.1_10717.t1 | 2 | 2 | RVT_1 | 541 | 582 | 9.3e-25 | 87.2 | 1.6 | 4700.0 | -3.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_383.1_10717.t1 | gi|736212075|ref|XP_010777518.1| | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104952402, partial [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_383.1_10717.t1 | gi|670419454|ref|XP_008650508.1| | PREDICTED: uncharacterized protein LOC103631357 [Zea mays] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_383.1_10717.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10717.t1 atgctcaattttgaactggtcattgatggtgtgacatttgcacagactgtccatgtaatcagtgagttgcattatccatt cattcttggtcttgacttcttaaagtcacatagtgcaaccattgattacagggctaacactctgaatatagaaacaaaca atgagctacatatttgttctattataactgacacaggtctagctagggtatcaaacgcagtagtgatccccagtcgtagc gaaactacaatacaggtgagagtttcaaggtgtcatgatgacgaggaagttttgttagagcctctgcactcactgtctct acaacacatcatagctgcaaaatgtgttgtcaaggtcaaagcccacggggcatatttgaaggtcatgaaccctatctatc aggacatacgtttaaaacgttcacaacacaaaatagagacaataccagggtctaaacctgtgaggaaacaattctataga acctcaccccatgtagccaaggaaattagaaggcaggttgatgaaatgcttgaaaatgacatcattcagccttcaaattc cgtatggcactcacctgtagtcatggtaaggaagaagaatggacaattgagatttgcttgtgattacagagcacttaaca aaatcacaattccaatgtcctttcctctccctcatcttgagactgtgtttgatgctattggtgattctaaagcccaatat ttcaccaatctagattttagatctgcgttttggcaagttgagatgagtgaagagtcaaggcataaggcagcgttcattac ccatgatggcgtattcgaatggaaaagaatgccatttggcttaatgaattctcctataaccttccaaacactcatgtcaa gtgtactaagacagatgaattttaagtcagtattagtgtacatagatgatgtacttatattttctcgtgattttgagaca catctcggagatctttcccaagttttctcaaaattaagggaagcaggtttgacattagaaccctcgaagtgtaattttgc agttaagcaacttaagttcttgggacatatcatttctcgccatagtgtcgaagtcgacccggagaaaacaaaggcagtca gtgagccaatgcctgccagagataagtttgaatgttggcagattgacatacttggtccacttcagaaaaccaaagatgat tatgagtacatactcctttgcattgatgcgggtacacattggcctgaggcctttcctctcaaatctcagaatgctaagga ggttgccaatgttctctttgaaaacattttctctcgctatggtgccccatccatcctattttctgatcgaggtcgaaatt ccatgtcaaagctcatcaatgccttgtgtgaaatcttcgagatctctcagtaccacaccagtagttacaagccaagtact aatggacttgtggaaagacaaaatagtgtcatagctcagtctctcagagcatattgcgagaaagacaagcaaagttggca taaactgcttcctggtatcatgatgtcttttcgcaagtctttttctgctcattctactgagttctctccctttttcctca tgtttgggaaggaaatgaggttaccttttgacatagacctacagccaaaggacaacttgggtcaagataccaaggagtat ttacaggagttcctatcaagacttaaggtagctaatgagattgctaagaaaaacactgagtaccaccagcagaaaaacaa agagcgttatgatcgcactgcaagggaaccaaactttaaggtagatgacctcgtactgataaactcacaccatgtaccta aaggtcagtcagccaaacttacagacaagtgtataggaccgtaccgaattatagaatgtggttctaactacacctatctg ctgaaaagagtatctgacaacaagatacatccttctcttatgaatgctattcacttgaagcattaccattcaccgacctc atctagagcccatcttgagccaaaagaacccgatgaagattcggatgatactcaacctttaagtgaccaggatactgaca atatcccagcatcaacatcccaaccaggtccatctcctgtcacatcgagggatgaaagtaacgcacagtcatctccgact agtcctgatcacacaatcccaagtgatcaaccaccatcagatcctcctaacaacaggagcgatcgcctttggaacattaa atacatcccatcagccaaatttaagaacgggaaacgtctcattcgtgttgtttgggagaatgattccagaacctgggaac ctgatgatgtgatgtatcttcttagtgctagattatatggtctgatcaaccttatagtcacccgacatcagcatcactca ttttttatctctgttttggctattgtagggtcactctcatcagtatggtaccatttcctgcctctcatcactctcttcat catctccccagtacccatggcatccgtaacaaacaaaggtgttaagtttgaaccaaccggagacactatcaatcgcctta attatggagtaatctttcagaaggactcacaattggttttaacacaggaatactggatccacacattccatatgaagcta cccagctcagctaaacccacaatagtatccagatgcgtgcagaaaacttcctattgctatgcaatcaatgacttattgag tgtctttcatgctcttaatcttgagacacagagtcatgtctcagaggtcgtcaaatgtattaaatcacttatcccacaca acgactttccaggatcaaacaataagtccactcggacacttcttcctttcattggcacaatctctagaaatttctttgga atagctacagttgatgacatcaacttgctggctagatatttcaatgctctgaattgtagaacgtctaaatttgccgacgt tttgaggcagtatgaaagtcatctttcttctttcatttctataacggataagatgactgccaaccttctgaatggaatca aaattaacagtcagaatattaatgttttggcaaatacattcaatgcaaaaatcagtcaattagaacaagctattaccaac atatctgctttgcttgttcaacaggtcaatgaggcaaatttactttggagcaaccttaacaatttacaatctgccttcca aagtttgatagagggaaaactttcaccatttctaatacccaaaaccaaactaaaacctgttctctttggtatcacaaaaa tgcttagaaattctcacaaaggcttttattga |
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Protein
| Protein ID | pfu_aug2.0_383.1_10717.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_383.1_10717.t1 MLNFELVIDGVTFAQTVHVISELHYPFILGLDFLKSHSATIDYRANTLNIETNNELHICSIITDTGLARVSNAVVIPSRS ETTIQVRVSRCHDDEEVLLEPLHSLSLQHIIAAKCVVKVKAHGAYLKVMNPIYQDIRLKRSQHKIETIPGSKPVRKQFYR TSPHVAKEIRRQVDEMLENDIIQPSNSVWHSPVVMVRKKNGQLRFACDYRALNKITIPMSFPLPHLETVFDAIGDSKAQY FTNLDFRSAFWQVEMSEESRHKAAFITHDGVFEWKRMPFGLMNSPITFQTLMSSVLRQMNFKSVLVYIDDVLIFSRDFET HLGDLSQVFSKLREAGLTLEPSKCNFAVKQLKFLGHIISRHSVEVDPEKTKAVSEPMPARDKFECWQIDILGPLQKTKDD YEYILLCIDAGTHWPEAFPLKSQNAKEVANVLFENIFSRYGAPSILFSDRGRNSMSKLINALCEIFEISQYHTSSYKPST NGLVERQNSVIAQSLRAYCEKDKQSWHKLLPGIMMSFRKSFSAHSTEFSPFFLMFGKEMRLPFDIDLQPKDNLGQDTKEY LQEFLSRLKVANEIAKKNTEYHQQKNKERYDRTAREPNFKVDDLVLINSHHVPKGQSAKLTDKCIGPYRIIECGSNYTYL LKRVSDNKIHPSLMNAIHLKHYHSPTSSRAHLEPKEPDEDSDDTQPLSDQDTDNIPASTSQPGPSPVTSRDESNAQSSPT SPDHTIPSDQPPSDPPNNRSDRLWNIKYIPSAKFKNGKRLIRVVWENDSRTWEPDDVMYLLSARLYGLINLIVTRHQHHS FFISVLAIVGSLSSVWYHFLPLITLFIISPVPMASVTNKGVKFEPTGDTINRLNYGVIFQKDSQLVLTQEYWIHTFHMKL PSSAKPTIVSRCVQKTSYCYAINDLLSVFHALNLETQSHVSEVVKCIKSLIPHNDFPGSNNKSTRTLLPFIGTISRNFFG IATVDDINLLARYFNALNCRTSKFADVLRQYESHLSSFISITDKMTANLLNGIKINSQNINVLANTFNAKISQLEQAITN ISALLVQQVNEANLLWSNLNNLQSAFQSLIEGKLSPFLIPKTKLKPVLFGITKMLRNSHKGFY |
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