Gene
| Gene Model ID | pfu_aug2.0_3831.1_05904 |
|---|---|
| Locus | scaffold3831.1 : 21396 ... 22815 : + |
| To GenomeBrowser | scaffold3831.1:21396..22815 |
| Genes list of scaffold | scaffold3831.1 |
| Synonym | pfu_aug1.0_4846.1_01832 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-4-like isoform 1 | GO:0006810 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3831.1_05904.t1 | 1 | 1 | Neur_chan_LBD | 12 | 213 | 7.90052e-42 | 142.8 | 2.8026e-45 | 1.10002e-41 | 142.4 |
| pfu_aug2.0_3831.1_05904.t1 | 1 | 1 | Neur_chan_memb | 221 | 311 | 1.3e-08 | 35.0 | 4.1e-12 | 2.0e-08 | 34.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3831.1_05904.t1 | gi|260801715|ref|XP_002595741.1| | hypothetical protein BRAFLDRAFT_200831 [Branchiostoma floridae] | 3.0e-38 |
| pfu_aug2.0_3831.1_05904.t1 | gi|390335471|ref|XP_003724161.1| | PREDICTED: neuronal acetylcholine receptor subunit alpha-3 isoform X1 [Strongylocentrotus purpuratus] | 6.0e-38 |
| pfu_aug2.0_3831.1_05904.t1 | gi|390335473|ref|XP_786790.3| | PREDICTED: neuronal acetylcholine receptor subunit alpha-3 isoform X3 [Strongylocentrotus purpuratus] | 7.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_3831.1_05904.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3831.1_05904.t1 atgtcaaacacaactgatgttgagagggttgataacctgacaacaacactactcaaagactacaacaagaaaacacgacc agtcaatgacaacaaacaaaagttgaacgtgtcattctctttccatattcggactataaactactacgatgaagttgctg gagtactttctatactatgcggacttcaactttggtggttggattacagactggcttggaatccccttgaatacgataat attacggtgttgaatctcttgcgttctgatatttggtatcctgaagttttcgcgactaacgttgcggataacctaagccc cgttgcgattggggtacccatcccttctgttgtggtggccaacgggatggtatggatgttactaagtgaccaaatcaaat acctgtgtaaaagtgacatgagctacttcccgtttgatagacaagaatgcaaacttgttttagggtcttggaattactat actcacgatatctatttggtgaggaacagtacgatggcagatttaaggtactactttaccaataacatatggactcttga gacaacatctatagatcagtataaagaaggagattatgaaggtttcctacagatcacgttacatttgagaagaaagccgc tgtatttttgcatcaatatgttggcaccaattattgcacttgcgttgctcaacaccatggtattcctgattcctgctcac tgtggagaaagaatttcctactctgtaactatcttcctcagtttcgtggttttcatgacactgatgtcagactatttacc aaagtcatcaacaaatttgtcctatttttcctacttctcacttatccttatattctacagcgcaatcatcactattgaat caaccctcatcatgcgactttactatcggaatcaagacgagcctgtttcctcgactgtaaaatgtttatataatgtactt agtttaaaagtatggaaagtgtgtctggggaggggaaagacaaaagtttgcgcagagaaatgtcatgaaaatgacattcc ttgtaagggtacagaattcccaaagaaaactttgacttatggagaaatcgctctaaagtttgatgccgttgcatttacat attctgtactttttgtcatatcaatttcactggcttatctaattttagtgtttgcatcataa |
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Protein
| Protein ID | pfu_aug2.0_3831.1_05904.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3831.1_05904.t1 MSNTTDVERVDNLTTTLLKDYNKKTRPVNDNKQKLNVSFSFHIRTINYYDEVAGVLSILCGLQLWWLDYRLAWNPLEYDN ITVLNLLRSDIWYPEVFATNVADNLSPVAIGVPIPSVVVANGMVWMLLSDQIKYLCKSDMSYFPFDRQECKLVLGSWNYY THDIYLVRNSTMADLRYYFTNNIWTLETTSIDQYKEGDYEGFLQITLHLRRKPLYFCINMLAPIIALALLNTMVFLIPAH CGERISYSVTIFLSFVVFMTLMSDYLPKSSTNLSYFSYFSLILIFYSAIITIESTLIMRLYYRNQDEPVSSTVKCLYNVL SLKVWKVCLGRGKTKVCAEKCHENDIPCKGTEFPKKTLTYGEIALKFDAVAFTYSVLFVISISLAYLILVFAS |
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