Gene
| Gene Model ID | pfu_aug2.0_3841.1_05910 |
|---|---|
| Locus | scaffold3841.1 : 26104 ... 29065 : - |
| To GenomeBrowser | scaffold3841.1:26104..29065 |
| Genes list of scaffold | scaffold3841.1 |
| Synonym | pfu_aug1.0_20002.1_61957 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| tripartite motif-containing protein 2-like | GO:0005488 GO:0005622 GO:0019219 GO:0044260 GO:0044767 GO:0060255 GO:0090304 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3841.1_05910.t1 | 2 | 1 | zf-B_box | 16 | 58 | 2.1e-11 | 43.5 | 5.8e-05 | 0.14 | 12.0 |
| pfu_aug2.0_3841.1_05910.t1 | 2 | 2 | zf-B_box | 75 | 112 | 2.1e-11 | 43.5 | 1.1e-12 | 2.7e-09 | 36.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3841.1_05910.t1 | gi|291237190|ref|XP_002738518.1| | PREDICTED: tripartite motif-containing protein 2-like [Saccoglossus kowalevskii] | 6.0e-12 |
| pfu_aug2.0_3841.1_05910.t1 | gi|291239183|ref|XP_002739511.1| | PREDICTED: tripartite motif-containing protein 2-like [Saccoglossus kowalevskii] | 2.0e-09 |
| pfu_aug2.0_3841.1_05910.t1 | gi|620951046|ref|XP_007663762.1| | PREDICTED: LOW QUALITY PROTEIN: transcription intermediary factor 1-beta, partial [Ornithorhynchus anatinus] | 3.0e-09 |
| pfu_aug2.0_3841.1_05910.t1 | gi|558207904|ref|XP_006133042.1| | PREDICTED: LOW QUALITY PROTEIN: transcription intermediary factor 1-beta-like, partial [Pelodiscus sinensis] | 5.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_3841.1_05910.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3841.1_05910.t1 atgagtgacaacggagcctcagcgattcctccccagacatttgtggagtgtggccaatgtaaagggaacgtcaacatatc atggttttgtaaaaactgtccttgctcactttgtgacatatatgctaccgcccacaagacatctcatcaatacaaattcc atacagtcgtaccacggacatacaccgttctccgattatacggaccggcaaaactagcagaacaatgtcacatccatcca gaaaaagaaatatcatcctactgcaatgattgcggcattccatgctgtgtcacgtgtatggtgaacgatcataaacgtca tgacttttccaccatagaagacaagtacctggatgcagaaaaaggcctgaataagtattacagacagctggacacagacg tcagaccaacgcttgaaaagatggaggaacaggcaagagcggatgtcaaggaagatgacagccatgtagagaaagtcata gatgatataaatatttttcgcaaagatattattcaaaattttaatagagcatgtgatgatctcattgttcaggttcaatc gtattcaagtaaatcaaatgaagggttgaaagaaattgaaacctcactgaaaaatcttgaacacataaagaaagaaattg aagaaaaaatagcaaggggaaatttagacctaaataaatatacacctcccaaaatggatacacttgttccaaaattgaaa ggtccatcaaaggttgtccaaatttttgaaccttctatgaatctgtttgatttgatgaaaaaggcagttggaattattca gtcaaaagaaatcaagaaagatgaaattaagagcagaaacataacaaatatcagatctgtacatgtacaaaaaaggactt catttaagagtaagatagacgtcatatccatgaccacaacaggtaacaacatggcctgggttatggattgttggagtccc actatgtatctgtataacaatatggccaagtttgtaaggtctgtgacagtggaaggtagtgtaggcatcaatgacatggc aatcgcaaagtcaggggatatgatagtgacatgtgtagacaagaaagtgaggcgtgtatcagtgagtggtaaggtgtcta cactgatagatactgcaccattgaactgtaaaggtgtgtgtctgactgacaaagaggagattgttgtgtgtttgaaaggt cagggtgatcaaacccacgtgggtgtgtacacacctgatggacgtagtaagctacgtgagacacggggtagggacgttaa ggggaattaccttgttactgacccttatcgtgtggtacagaatggtcaggatctgtgtgtagttaattatagtgagaatg tggtatgtgtagatgagagagataatgtgaggtgggtatatgacggtaaggaatctaaactagggaattcatttggttca cgttgtatatgtgttgaccagtacaagaacctgctggtcactgatggaaaaaataactgtatacattatatagatgggga cggaggactaatacaggtgataatgacacaggaacaaataggattacagtatccttgggggatctgtgtagatgatgtta aaggacatatctgggttggaaatagttcttggaatgttgtcattgctacatacttagaataa |
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Protein
| Protein ID | pfu_aug2.0_3841.1_05910.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3841.1_05910.t1 MSDNGASAIPPQTFVECGQCKGNVNISWFCKNCPCSLCDIYATAHKTSHQYKFHTVVPRTYTVLRLYGPAKLAEQCHIHP EKEISSYCNDCGIPCCVTCMVNDHKRHDFSTIEDKYLDAEKGLNKYYRQLDTDVRPTLEKMEEQARADVKEDDSHVEKVI DDINIFRKDIIQNFNRACDDLIVQVQSYSSKSNEGLKEIETSLKNLEHIKKEIEEKIARGNLDLNKYTPPKMDTLVPKLK GPSKVVQIFEPSMNLFDLMKKAVGIIQSKEIKKDEIKSRNITNIRSVHVQKRTSFKSKIDVISMTTTGNNMAWVMDCWSP TMYLYNNMAKFVRSVTVEGSVGINDMAIAKSGDMIVTCVDKKVRRVSVSGKVSTLIDTAPLNCKGVCLTDKEEIVVCLKG QGDQTHVGVYTPDGRSKLRETRGRDVKGNYLVTDPYRVVQNGQDLCVVNYSENVVCVDERDNVRWVYDGKESKLGNSFGS RCICVDQYKNLLVTDGKNNCIHYIDGDGGLIQVIMTQEQIGLQYPWGICVDDVKGHIWVGNSSWNVVIATYLE |
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