Gene
| Gene Model ID | pfu_aug2.0_385.1_17362 |
|---|---|
| Locus | scaffold385.1 : 117304 ... 129155 : - |
| To GenomeBrowser | scaffold385.1:117304..129155 |
| Genes list of scaffold | scaffold385.1 |
| Synonym | pfu_aug1.0_12869.1_10527 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| c-type lectin domain family member a-like | GO:0005488 GO:0005576 GO:0005886 GO:0009893 GO:0044425 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_385.1_17362.t1 | 2 | 1 | Lectin_C | 24 | 62 | 8.8e-17 | 61.6 | 0.00031 | 4.5 | 7.9 |
| pfu_aug2.0_385.1_17362.t1 | 2 | 2 | Lectin_C | 76 | 180 | 8.8e-17 | 61.6 | 1.1e-17 | 1.6e-13 | 51.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_385.1_17362.t1 | gi|564253365|ref|XP_006265686.1| | PREDICTED: C-type lectin domain family 17, member A-like [Alligator mississippiensis] | 3.0e-15 |
| pfu_aug2.0_385.1_17362.t1 | gi|557280840|ref|XP_006023403.1| | PREDICTED: C-type lectin domain family 4 member M-like isoform X2 [Alligator sinensis] | 1.0e-14 |
| pfu_aug2.0_385.1_17362.t1 | gi|557280838|ref|XP_006023402.1| | PREDICTED: C-type lectin domain family 4 member M-like isoform X1 [Alligator sinensis] | 1.0e-14 |
| pfu_aug2.0_385.1_17362.t1 | gi|617425663|ref|XP_007560059.1| | PREDICTED: hepatic lectin-like [Poecilia formosa] | 1.0e-13 |
| pfu_aug2.0_385.1_17362.t1 | gi|119589410|gb|EAW69004.1| | Fc fragment of IgE, low affinity II, receptor for (CD23), isoform CRA_a [Homo sapiens] | 1.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_385.1_17362.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_385.1_17362.t1 atgagcttcgaattcagaggttgcttttttctcggcaatggaacttctggatctgctattgaacaactctataaagtatg taatatattaggcggcaagctagcagaaccggatacaagggatgagatagacttccttggaaagaaagtcagagaaactg gttgccgacaggggtggatccaacacaatggcacatgctatttcttcagtaactacaccacttttttctccaatgcctgg aaagtatgtaatatattgggcggcaagctagcagagccagatacaagggatgaaattgacttccttagaaagaaagtcag agaaactggtgaaaaccacttcataggcatcgcagactatgatcatgaagggcagtgggtgtatgtttcaaacaatcagc acgtaaagctgactgactgggcgccgaatgaacccacgccaactaaagccactgtggaggactgtggggagatagggata cacggaagatgggctgatgttgtatgcgactcaataccccggtactacatctgtgaaacaacatttgacctacctcgacg tcaaggcagaacaccacgtgaccgtaatactgcgacaccattgtctgaagttagtacaaggcgtgataatgataaattcg ataatgacacaccacaacaatgtggaggatctactcacctcgccaaaaatgccaaggtgacgatccagggtttagggaag gtgcctaatggttactgtgggttagtggtgtacgccatgcaggacatgggggattgtaaatatcccgctatatgtgcaac agtgtcaggcgcggacatgggggcgtgtagggcaaaggtcacattcaccggaaaatacttcacacagaaaagtgatcatt ctaaggacctagactgtaacacaccatgcgtaagttttgtacccaggggtccgttctaa |
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Protein
| Protein ID | pfu_aug2.0_385.1_17362.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_385.1_17362.t1 MSFEFRGCFFLGNGTSGSAIEQLYKVCNILGGKLAEPDTRDEIDFLGKKVRETGCRQGWIQHNGTCYFFSNYTTFFSNAW KVCNILGGKLAEPDTRDEIDFLRKKVRETGENHFIGIADYDHEGQWVYVSNNQHVKLTDWAPNEPTPTKATVEDCGEIGI HGRWADVVCDSIPRYYICETTFDLPRRQGRTPRDRNTATPLSEVSTRRDNDKFDNDTPQQCGGSTHLAKNAKVTIQGLGK VPNGYCGLVVYAMQDMGDCKYPAICATVSGADMGACRAKVTFTGKYFTQKSDHSKDLDCNTPCVSFVPRGPF |
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