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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_386.1_20699
Locus scaffold386.1 : 2483 ... 6095 : -
To GenomeBrowser scaffold386.1:2483..6095
Genes list of scaffold scaffold386.1
Synonym pfu_aug1.0_4931.1_30820

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_386.1_20699.t1 5 1 Myc_N 1 109 1.1e-23 83.9 2.4e-24 1.2e-20 73.9
pfu_aug2.0_386.1_20699.t1 5 2 Myc_N 107 136 1.1e-23 83.9 9.3e-08 0.00046 19.4
pfu_aug2.0_386.1_20699.t1 5 3 Myc_N 152 174 1.1e-23 83.9 1.4e-05 0.069 12.3
pfu_aug2.0_386.1_20699.t1 5 4 Myc_N 194 254 1.1e-23 83.9 0.12 600.0 -0.7
pfu_aug2.0_386.1_20699.t1 5 5 Myc_N 268 305 1.1e-23 83.9 0.045 220.0 0.7
pfu_aug2.0_386.1_20699.t1 1 1 HLH 304 355 1.0e-11 44.3 4.4e-15 2.2e-11 43.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_386.1_20699.t1 gi|657583122|ref|XP_008295653.1| PREDICTED: N-myc proto-oncogene protein [Stegastes partitus] 2.8026e-45
pfu_aug2.0_386.1_20699.t1 gi|734622719|ref|XP_010739323.1| PREDICTED: N-myc proto-oncogene protein [Larimichthys crocea] 4.2039e-45
pfu_aug2.0_386.1_20699.t1 gi|259013287|ref|NP_001158444.1| myc proto-oncogene protein [Saccoglossus kowalevskii] 1.96182e-44
pfu_aug2.0_386.1_20699.t1 gi|573875363|ref|XP_006626008.1| PREDICTED: N-myc proto-oncogene protein-like [Lepisosteus oculatus] 5.04467e-44
pfu_aug2.0_386.1_20699.t1 gi|551502273|ref|XP_005802681.1| PREDICTED: N-myc proto-oncogene protein-like [Xiphophorus maculatus] 2.00386e-43

Transcript
Transcript IDpfu_aug2.0_386.1_20699.t1
Definition-
>pfu_aug2.0_386.1_20699.t1
atggactacgatacatttcagccttgcttttatgaaaacgagacagagctgtcacctgtaggatcatatccaaatgaaga
catgtggaagaagtttgagttgcttcccaccccacccctttccccacagagagatgaccagtttgattctaccctggatt
tggagaacctcacactgccactgacagattacattctgaatgatgatgatgatgcctcgctatttgagaaaatgactttt
ccggaatcacctccttcgcctagtttacattctaaattaattcaggattgtatgtggtcaggtgattctggacgttacaa
gacaggagacaagctgtcaacatcactggatgtcaactcctcagattgtgtggatcctgcagctgtcttcccgtacccca
tgcatagcatcactggttacatgagtgaaacgaagctacacaacctgggtactgaaacaccttctgattcagaagaggag
attgatgttgtcactgttgaacgccaacaacaacaagttccagctgtatcaggcaaaaggaaagctactcttctcatcca
aagtgttaaaactgaaccatcatccgaattgtcatctcccgctaaaacgacagttaccgtgaaagtgaaagtagacagac
cactgcagcaaacggagcagccaaggagagttgagtgtccgactgatgtacataactattgtcaacccttcaaacgtgtt
cgctcaatgccatcttcagcaagcagttcaccatcacattcaaaacgttttaaacgggaattaagtgtaccagaatttca
taaacgtgtatcacagaaactacattcatcacatcgtatccgttcacactattgtagtagcaatacgtcaagtagaacat
catcagactctgaagattgcccagagggcaagaggagtcaacacaatgacttggaacgtaaacgtagaaatgacctcaaa
tttagtttctttgctctcagggatagtataccagacttaatgaaacaggaacgtgcgcctaaagttctcattcttaaaaa
ggcatctgaacacatacgaaaactgggtcatgaagaacagagacttgtagaagataaggaaatgttgagtgcaaaacacg
agcagttgttaaggactttagagcatctacgtgctagagaattttaa

Protein
Protein IDpfu_aug2.0_386.1_20699.t1
Definition-
>pfu_aug2.0_386.1_20699.t1
MDYDTFQPCFYENETELSPVGSYPNEDMWKKFELLPTPPLSPQRDDQFDSTLDLENLTLPLTDYILNDDDDASLFEKMTF
PESPPSPSLHSKLIQDCMWSGDSGRYKTGDKLSTSLDVNSSDCVDPAAVFPYPMHSITGYMSETKLHNLGTETPSDSEEE
IDVVTVERQQQQVPAVSGKRKATLLIQSVKTEPSSELSSPAKTTVTVKVKVDRPLQQTEQPRRVECPTDVHNYCQPFKRV
RSMPSSASSSPSHSKRFKRELSVPEFHKRVSQKLHSSHRIRSHYCSSNTSSRTSSDSEDCPEGKRSQHNDLERKRRNDLK
FSFFALRDSIPDLMKQERAPKVLILKKASEHIRKLGHEEQRLVEDKEMLSAKHEQLLRTLEHLRAREF

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