Gene
| Gene Model ID | pfu_aug2.0_386.1_20701 |
|---|---|
| Locus | scaffold386.1 : 83376 ... 92424 : + |
| To GenomeBrowser | scaffold386.1:83376..92424 |
| Genes list of scaffold | scaffold386.1 |
| Synonym | pfu_aug1.0_280452.1_64940 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ficolin-1 isoform x1 | GO:0044699 GO:0050789 GO:0050896 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_386.1_20701.t1 | 1 | 1 | Fibrinogen_C | 150 | 360 | 0.0 | 160.9 | 0.0 | 0.0 | 158.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_386.1_20701.t1 | gi|611978446|ref|XP_007475447.1| | PREDICTED: ficolin-2-like [Monodelphis domestica] | 2.0e-39 |
| pfu_aug2.0_386.1_20701.t1 | gi|597781751|ref|XP_007254444.1| | PREDICTED: fibroleukin-like [Astyanax mexicanus] | 2.0e-38 |
| pfu_aug2.0_386.1_20701.t1 | gi|640802174|ref|XP_008057401.1| | PREDICTED: ficolin-1 [Tarsius syrichta] | 6.0e-38 |
| pfu_aug2.0_386.1_20701.t1 | gi|354504089|ref|XP_003514111.1| | PREDICTED: ficolin-1 isoform X1 [Cricetulus griseus] | 1.0e-37 |
Transcript
| Transcript ID | pfu_aug2.0_386.1_20701.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_386.1_20701.t1 atgataccttccttttgtaaaatacaaaataacgaaggaaaagtatttgatcgaactctacaggatcacagaaattactt tactactatgccctcgctgggatgtggtgccatactagtagcgtatgtcttctctttggtcaaggcctccaccaaccatc gaacattccaacaggagagttttgtccaaaagatagccaacgtacatagtcagaactgtccacctaatgtcaagaaagtg tctatcggggatctcaacatgatcaaatgttcgttagcatgtttagaaggaggggagtgtaatgtcttcatgtataaaga tggtggggcttgttatataggagaagatctaaataccagtgatgacccgggaacagtacagatggacgacatctacagac tttacttggagaactgtaaccaatctagctccttgagtgcacaacctacatcttgccaggacatcctgggattaggagtg acgtgtaacgggttatacacaatctacccggatagcgtcacccctacaacagtgtactgtgacatgcgcactctgggagg cggctggacggtttttcaaaggagaaaagatggctcggtgaacttcaatctgaattgggctgattataaagctggctttg gaaccatagaaaattattggattggtaacgatatgctgcacatgttaacagctagccaggacacagaactgtatgttata atgagggattggaattgtgacgtgtattacgcgagccacgcgccaacattccaggctcctgtcgccgacagacgacgtcg ggcgaactttccgttgtcaagcagacgacaacacacgttttctacattttctcttcgttatagaaggttcactactaaag acagggattacgatggtggagtgtcagataactgtgcagtgagattccatgacgggggatggtggtttaattactgtaca ataacagacttaaacggccgatatgtacaggggatgatcaatgatgatagatcaatgcactggaaaagaattcatggaga acgctatgccctggaatcagctgtcatgatggtcagacgtcgctga |
|
Protein
| Protein ID | pfu_aug2.0_386.1_20701.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_386.1_20701.t1 MIPSFCKIQNNEGKVFDRTLQDHRNYFTTMPSLGCGAILVAYVFSLVKASTNHRTFQQESFVQKIANVHSQNCPPNVKKV SIGDLNMIKCSLACLEGGECNVFMYKDGGACYIGEDLNTSDDPGTVQMDDIYRLYLENCNQSSSLSAQPTSCQDILGLGV TCNGLYTIYPDSVTPTTVYCDMRTLGGGWTVFQRRKDGSVNFNLNWADYKAGFGTIENYWIGNDMLHMLTASQDTELYVI MRDWNCDVYYASHAPTFQAPVADRRRRANFPLSSRRQHTFSTFSLRYRRFTTKDRDYDGGVSDNCAVRFHDGGWWFNYCT ITDLNGRYVQGMINDDRSMHWKRIHGERYALESAVMMVRRR |
|