Gene
| Gene Model ID | pfu_aug2.0_386.1_20704 |
|---|---|
| Locus | scaffold386.1 : 115846 ... 125254 : + |
| To GenomeBrowser | scaffold386.1:115846..125254 |
| Genes list of scaffold | scaffold386.1 |
| Synonym | pfu_aug1.0_11850.1_68418 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 39s ribosomal protein mitochondrial | GO:0003735 GO:0005840 GO:0006412 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_386.1_20704.t1 | 1 | 1 | Ribosomal_L13 | 36 | 117 | 1.5e-16 | 60.5 | 1.4e-20 | 2.1e-16 | 60.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_386.1_20704.t1 | gi|524903021|ref|XP_005107728.1| | PREDICTED: 39S ribosomal protein L13, mitochondrial-like [Aplysia californica] | 7.0e-30 |
| pfu_aug2.0_386.1_20704.t1 | gi|676436457|ref|XP_009047889.1| | hypothetical protein LOTGIDRAFT_186083 [Lottia gigantea] | 1.0e-23 |
| pfu_aug2.0_386.1_20704.t1 | gi|241161087|ref|XP_002408852.1| | ribosomal protein L13, putative [Ixodes scapularis] | 2.0e-23 |
| pfu_aug2.0_386.1_20704.t1 | gi|675868718|ref|XP_009019919.1| | hypothetical protein HELRODRAFT_65856 [Helobdella robusta] | 3.0e-23 |
| pfu_aug2.0_386.1_20704.t1 | gi|291223225|ref|XP_002731608.1| | PREDICTED: 39S ribosomal protein L13, mitochondrial-like [Saccoglossus kowalevskii] | 4.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_386.1_20704.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_386.1_20704.t1 atggttactaaataccctacaccaatcaaacttgtctacatgcttaatctgaccttaatttcatgctcgtgtgaccaggt tagacatctagaatgctttgatgatactgatgtaggtgatcatgtagtagtgattaacacaggacagattgccatgagag aggattactggagaacgttctcatacagccatcacacaagatatgctaaaggcttttcacgcacctcagcttggagatta cataatattgaaccaacaaaggtttttgaaaaggcagtttactcacgacttccaggagatctactgagaaagacgttaat gagacggcttcatttataccccgatgagaaggagttattgctcttggacttaaaagtacgttcagttttgtctgttgttg tggcatttatgttacttcatatctag |
|
Protein
| Protein ID | pfu_aug2.0_386.1_20704.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_386.1_20704.t1 MVTKYPTPIKLVYMLNLTLISCSCDQVRHLECFDDTDVGDHVVVINTGQIAMREDYWRTFSYSHHTRYAKGFSRTSAWRL HNIEPTKVFEKAVYSRLPGDLLRKTLMRRLHLYPDEKELLLLDLKVRSVLSVVVAFMLLHI |
|