Gene
| Gene Model ID | pfu_aug2.0_386.1_20705 |
|---|---|
| Locus | scaffold386.1 : 128219 ... 160415 : - |
| To GenomeBrowser | scaffold386.1:128219..160415 |
| Genes list of scaffold | scaffold386.1 |
| Synonym | pfu_aug1.0_33020.1_70067 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_386.1_20705.t1 | 11 | 1 | Collagen | 281 | 337 | 0.0 | 266.9 | 2.6e-13 | 1.9e-09 | 36.8 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 2 | Collagen | 325 | 383 | 0.0 | 266.9 | 2.4e-13 | 1.8e-09 | 36.9 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 3 | Collagen | 387 | 425 | 0.0 | 266.9 | 1.8e-08 | 0.00014 | 21.3 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 4 | Collagen | 438 | 496 | 0.0 | 266.9 | 7.6e-13 | 5.7e-09 | 35.3 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 5 | Collagen | 492 | 549 | 0.0 | 266.9 | 3.5e-12 | 2.6e-08 | 33.2 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 6 | Collagen | 563 | 620 | 0.0 | 266.9 | 6.7e-13 | 5.0e-09 | 35.5 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 7 | Collagen | 689 | 738 | 0.0 | 266.9 | 2.8e-12 | 2.1e-08 | 33.5 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 8 | Collagen | 756 | 810 | 0.0 | 266.9 | 1.2e-09 | 9.2e-06 | 25.1 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 9 | Collagen | 780 | 838 | 0.0 | 266.9 | 1.3e-13 | 9.5e-10 | 37.8 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 10 | Collagen | 874 | 931 | 0.0 | 266.9 | 2.7e-07 | 0.002 | 17.6 |
| pfu_aug2.0_386.1_20705.t1 | 11 | 11 | Collagen | 933 | 983 | 0.0 | 266.9 | 1.7e-08 | 0.00013 | 21.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_386.1_20705.t1 | gi|512841643|ref|XP_002939453.2| | PREDICTED: collagen alpha-1(XIX) chain [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_386.1_20705.t1 | gi|543345675|ref|XP_005518642.1| | PREDICTED: collagen alpha-1(XIX) chain [Pseudopodoces humilis] | 0.0 |
| pfu_aug2.0_386.1_20705.t1 | gi|584000598|ref|XP_006795350.1| | PREDICTED: collagen alpha-1(XXII) chain-like [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_386.1_20705.t1 | gi|514705333|ref|XP_005009779.1| | PREDICTED: LOW QUALITY PROTEIN: collagen alpha-1(XIX) chain [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_386.1_20705.t1 | gi|657560879|ref|XP_008284134.1| | PREDICTED: collagen alpha-1(XXII) chain, partial [Stegastes partitus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_386.1_20705.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_386.1_20705.t1 atgaggctactaaggcgtggccagcccggggggattgtcattttactcacatgtctttctcaatacattccaaatattag ctgctcaaaatgtgatctttggcgtgatggacagggggatattccagtttatgatttcttgtcttctgttgatgatttta catggataaatgaggtgcgagggtccactgatgcacaaacagcatatgaactaaccagaaggagaccaaaacaaacaaga gaatggtcatttcctacaagtcgttatttcgatgaaggttttcctagtaaattttcttttacaacaacatatcgtctagc tgccttaactcgtagagagacatggaatatcattgacattcaggatagatatgataatactcaattcgctgttcagtttg atggaggaaagaaacagataaaagttatttatatggatcgttatgacaacacagagaaagtcgctatattcaacaagaaa gaaaaaatgaagaaaataagaaaggcattcaaaagggaatggaagaagattcatatcagtgtacaagacggttacgtggc cctgagcgtggattgtgaggctatagaaaaagtacctatgggatccatcgccgatattgatctgaatggagaaatactca ttggacagtccgtgtctaaaccaagacccgcaaaggttgaacttcaatggttggccatctcctgtgactttaatccaccc actagtgatgaatgctcagaaatccccacgcgccaacctaacaagaggaaccgaaacatgtaccagaacgtgatgatgga ccagcagagacgtggagatatgggttgtactattgagtgtccagcaggtcttcctggcacagacggaaaaccgggtcctg aaggtaggcgtggtcctcctgggatacagggtttacctggggactctggagaggacggactacagggagagagaggaccg gtgggaagggatggcaaagatggtcaagacggacgccccggacatcctggcttacagggacttcagggagaaacgggacc acaggggccgagaggagaggtggggccacaaggtctcactggaagagatgggttaccaggagaaagaggtcttcctggat tggtagggaagcctggtccacagggagaaagtattgaaggacctgaaggaccagagggcgatgaaggtcctcaaggacca ccaggaccccagggagagactggtctgagaggagagcgcggagagagggggctcccaggagctcaggccacgggaagtga aggggaaatatccaatgttatccagcccgtgggagcacccggactaccaggcccacaaggaaatgatggaccacagggac ccgaaggaccagaaggaccggccggacctcagggaccacagggagagcggggtgaccaaggtccaccaggattggacggc ttaccaggaccatggggaccgaaaggtgatagaggagaaatgggaccagaaggaagacaaggcaaacggggttttaaggg cgagacaggtccgcaaggcgaacgcggacaagacggtgctgctggaattccaggaaaacgaggaaagcttggagaaaaag gagaacagggagaaccgggtaagcccgggccaccaggcccaccgggacccggattttccatgttccagagtgacgacccg ggcgtaggtgctccaggtttccgtggggacagaggcgaacagggaccgatgggaccctctggtgttgatggcagacccgg tgcacctggcagtccgggattgcctggtgaaccagggacccgtggacgtgatggtaaccagggtccagtcggagccccag gtgctccgggtatggacggaactgacgtaagtattgacagaaatatagctaaccgttctaccctaatttgtgatcacgaa tgtagatccatgattatgatcatacttataagcagcgctgaaagcttccatagaaaaggtctgcggaagggaaagggaaa aggcaaggggaagggaaagggtaaagggaagacaaagaagattaacttggctgattcgttacagggggatcagggcgtgg caggagtaccaggggcacggggaccaccaggacaagatggacgaccgggtcctcaaggtatggctggatcaccaggacca atggggcccatgggaccacgaggcatgcagggattaccgggaccaccaggacccacgccagaaattgatctcaaatcttt atacggcggtgtaggcccaatggacggaggtgtaggtccacaaggggccccggtaagtttatgtccacacgggcggacag gaactccgggaccatccggagcacctggaacaactggcatgcccggtgagcgtgggtcccccggtgagcgtggaccaatg ggatcggtgggtgccccagggatgccaggaacccccggaccatcgggtcaggtaggacctaggggattgagaggacagcc aggaatgcccggtatgcccggaacaccgggacagagtatttctgaagatgaaatcagggaactgtgttaccaaattctta gagagaagatagaggagcttactgctagactccaaggtcctcctggacttcctggcgtgggaaaaccaggtgctcaagga ccacccggcagacaaggggaaccaggtgagcgcggtttaccgggtaaatcaggagagcgaggatttatcggaattccagg cacccccggttcacagggaccaccaggacccgcagggcaggagggacccaagggagagaggggagaaactggtgaaggac tcattggccctacaggacccccgggacctgctggtcctcaaggcccaccaggtgagggagtgcaaggacggccaggagac cgcggcgcaccaggtatacccgggcttcacggacgtagaggaccaactggacctaccgggccaccaggatattgtgaata ctgtaactttgctgccggtaaccccgccccagaatatatccagctcggcggaaggagacagggcaacttcaaggggcctt caaaatag |
|
Protein
| Protein ID | pfu_aug2.0_386.1_20705.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_386.1_20705.t1 MRLLRRGQPGGIVILLTCLSQYIPNISCSKCDLWRDGQGDIPVYDFLSSVDDFTWINEVRGSTDAQTAYELTRRRPKQTR EWSFPTSRYFDEGFPSKFSFTTTYRLAALTRRETWNIIDIQDRYDNTQFAVQFDGGKKQIKVIYMDRYDNTEKVAIFNKK EKMKKIRKAFKREWKKIHISVQDGYVALSVDCEAIEKVPMGSIADIDLNGEILIGQSVSKPRPAKVELQWLAISCDFNPP TSDECSEIPTRQPNKRNRNMYQNVMMDQQRRGDMGCTIECPAGLPGTDGKPGPEGRRGPPGIQGLPGDSGEDGLQGERGP VGRDGKDGQDGRPGHPGLQGLQGETGPQGPRGEVGPQGLTGRDGLPGERGLPGLVGKPGPQGESIEGPEGPEGDEGPQGP PGPQGETGLRGERGERGLPGAQATGSEGEISNVIQPVGAPGLPGPQGNDGPQGPEGPEGPAGPQGPQGERGDQGPPGLDG LPGPWGPKGDRGEMGPEGRQGKRGFKGETGPQGERGQDGAAGIPGKRGKLGEKGEQGEPGKPGPPGPPGPGFSMFQSDDP GVGAPGFRGDRGEQGPMGPSGVDGRPGAPGSPGLPGEPGTRGRDGNQGPVGAPGAPGMDGTDVSIDRNIANRSTLICDHE CRSMIMIILISSAESFHRKGLRKGKGKGKGKGKGKGKTKKINLADSLQGDQGVAGVPGARGPPGQDGRPGPQGMAGSPGP MGPMGPRGMQGLPGPPGPTPEIDLKSLYGGVGPMDGGVGPQGAPVSLCPHGRTGTPGPSGAPGTTGMPGERGSPGERGPM GSVGAPGMPGTPGPSGQVGPRGLRGQPGMPGMPGTPGQSISEDEIRELCYQILREKIEELTARLQGPPGLPGVGKPGAQG PPGRQGEPGERGLPGKSGERGFIGIPGTPGSQGPPGPAGQEGPKGERGETGEGLIGPTGPPGPAGPQGPPGEGVQGRPGD RGAPGIPGLHGRRGPTGPTGPPGYCEYCNFAAGNPAPEYIQLGGRRQGNFKGPSK |
|