Gene
| Gene Model ID | pfu_aug2.0_3872.1_09240 |
|---|---|
| Locus | scaffold3872.1 : 1129 ... 32405 : - |
| To GenomeBrowser | scaffold3872.1:1129..32405 |
| Genes list of scaffold | scaffold3872.1 |
| Synonym | pfu_aug1.0_6258.1_45399 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| sushi repeat-containing protein srpx isoform x3 | GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3872.1_09240.t1 | 4 | 1 | Sushi | 30 | 40 | 1.0e-08 | 35.4 | 0.11 | 240.0 | 2.1 |
| pfu_aug2.0_3872.1_09240.t1 | 1 | 1 | HYR | 105 | 185 | 3.9e-12 | 46.0 | 4.0e-15 | 8.5e-12 | 44.9 |
| pfu_aug2.0_3872.1_09240.t1 | 4 | 2 | Sushi | 176 | 195 | 1.0e-08 | 35.4 | 0.3 | 630.0 | 0.8 |
| pfu_aug2.0_3872.1_09240.t1 | 4 | 3 | Sushi | 190 | 240 | 1.0e-08 | 35.4 | 1.9e-05 | 0.04 | 14.2 |
| pfu_aug2.0_3872.1_09240.t1 | 4 | 4 | Sushi | 268 | 316 | 1.0e-08 | 35.4 | 6.8e-09 | 1.4e-05 | 25.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3872.1_09240.t1 | gi|573903113|ref|XP_006639280.1| | PREDICTED: sushi repeat-containing protein SRPX-like [Lepisosteus oculatus] | 4.0e-21 |
| pfu_aug2.0_3872.1_09240.t1 | gi|612016688|ref|XP_007493408.1| | PREDICTED: sushi repeat-containing protein SRPX [Monodelphis domestica] | 6.0e-21 |
| pfu_aug2.0_3872.1_09240.t1 | gi|432930998|ref|XP_004081564.1| | PREDICTED: sushi repeat-containing protein SRPX [Oryzias latipes] | 7.0e-21 |
| pfu_aug2.0_3872.1_09240.t1 | gi|602655079|ref|XP_007433310.1| | PREDICTED: sushi repeat-containing protein SRPX isoform X1 [Python bivittatus] | 8.0e-21 |
| pfu_aug2.0_3872.1_09240.t1 | gi|602655083|ref|XP_007433312.1| | PREDICTED: sushi repeat-containing protein SRPX isoform X3 [Python bivittatus] | 8.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_3872.1_09240.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3872.1_09240.t1 atgaattgtcggataaaagacattttgccagatatggttggtgatacagagcaactgtttactgaggaggacacattcac attatcagataaaacgtacaaatgcaaggatggaaggtggatcgatgttgattcagtgaacaaggacagacatggacgcc taaaacgctctcctaaagtagatgacgctattaaaggtgcggtcgtcggtggaataattggaaccgcctttggtcccgta ggaaccggtgtcggtgctgcaataggatctgcgctttgcgttttgttctgttcaggaacaccacctccaaacaaacctcc atcaattatttgtccctcagctacaacagatctatacgcaccaagaggagaaacatccatggttgtgacatgggacgtgc caacaggtcaggatcacgaggacgggtcgttgacggctaatcttttgtctggaggagagccgggatcaacattttccaga ggatatcataccattgtttactctgtcacagacagagggggaatatctgctacatgccattttcagttcaaagtctctgt tattacctgtaatcctatccgatggccagacaacggatacgtgaattgtggtcaactggaatttatatggggacgatcat gtgacgtgcactgtgataaagggttcgaaataggcggcacaacctcgaacaccaaacaaacaatagtgtgtgaaagagac tctaacgatggcgtgtacgacaaagatatagccaagtgttcagcaataatatgtgatgggaacgccagcgaactacatcc tgagaatggaaatgctgagtgtacacatagtagctataaatacgacacttcttgtttcaccagctgtaacagcggatact cctcctctggatcggtgctaacaacatgtcaagctgatagcacttggtcaacgcagcttcagagttgttatggtcagcaa ttgatataa |
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Protein
| Protein ID | pfu_aug2.0_3872.1_09240.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3872.1_09240.t1 MNCRIKDILPDMVGDTEQLFTEEDTFTLSDKTYKCKDGRWIDVDSVNKDRHGRLKRSPKVDDAIKGAVVGGIIGTAFGPV GTGVGAAIGSALCVLFCSGTPPPNKPPSIICPSATTDLYAPRGETSMVVTWDVPTGQDHEDGSLTANLLSGGEPGSTFSR GYHTIVYSVTDRGGISATCHFQFKVSVITCNPIRWPDNGYVNCGQLEFIWGRSCDVHCDKGFEIGGTTSNTKQTIVCERD SNDGVYDKDIAKCSAIICDGNASELHPENGNAECTHSSYKYDTSCFTSCNSGYSSSGSVLTTCQADSTWSTQLQSCYGQQ LI |
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