Gene
| Gene Model ID | pfu_aug2.0_3872.1_09241 |
|---|---|
| Locus | scaffold3872.1 : 34366 ... 39270 : + |
| To GenomeBrowser | scaffold3872.1:34366..39270 |
| Genes list of scaffold | scaffold3872.1 |
| Synonym | pfu_aug1.0_1497.1_07979 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3872.1_09241.t1 | 3 | 1 | Sushi | 71 | 81 | 1.9e-09 | 37.6 | 1.7 | 6300.0 | -2.4 |
| pfu_aug2.0_3872.1_09241.t1 | 2 | 1 | EGF | 98 | 121 | 4.4e-07 | 29.7 | 0.055 | 200.0 | 2.0 |
| pfu_aug2.0_3872.1_09241.t1 | 3 | 2 | Sushi | 130 | 184 | 1.9e-09 | 37.6 | 5.2e-13 | 1.9e-09 | 37.6 |
| pfu_aug2.0_3872.1_09241.t1 | 2 | 2 | EGF | 190 | 218 | 4.4e-07 | 29.7 | 1.2e-10 | 4.4e-07 | 29.7 |
| pfu_aug2.0_3872.1_09241.t1 | 1 | 1 | HYR | 224 | 303 | 2.0e-08 | 34.1 | 1.0e-11 | 3.8e-08 | 33.2 |
| pfu_aug2.0_3872.1_09241.t1 | 3 | 3 | Sushi | 341 | 364 | 1.9e-09 | 37.6 | 0.32 | 1200.0 | -0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3872.1_09241.t1 | gi|390336919|ref|XP_785416.3| | 9.0e-26 | |
| pfu_aug2.0_3872.1_09241.t1 | gi|260821499|ref|XP_002606070.1| | hypothetical protein BRAFLDRAFT_92090 [Branchiostoma floridae] | 1.0e-25 |
| pfu_aug2.0_3872.1_09241.t1 | gi|390336916|ref|XP_785352.3| | 8.0e-21 | |
| pfu_aug2.0_3872.1_09241.t1 | gi|390368159|ref|XP_003731400.1| | 1.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_3872.1_09241.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3872.1_09241.t1 atgaacgacatgatgtctattagatcatcacatacattgtatatgctgaagaattataaacagcttttgtatctacaact gttgctgtatgcaccgcttcttgaagcaggtcgtgcttctacgtgggacttctgtaattgttattgggggacatgggatc catggtcatcgtgtactagaacatgcggtggtggatcacagtacagaacaagagttgtgtggcatagagatgtaccggaa tgtgacggctttcatttctgtgcttctaacgacatgggctcagaatggcagatatgtaatactcagtgtcaaaatggtgg caccttcttcacttcatgtatttgtcagactggattctatggcacatgttgcgaacatgaagttacatgtggggaccctg gtggtgttcctaacggtgttagaactggatcatcttacacttacagcagcgtgttgacatacgcttgtaatactggttac aacatgacgtcaggtgacagcagtctgcagtgttcctcaactggactatggtccggcgtcaaaccaacatgtagatttgt gaacacatgtaacagcaatccgtgtcagaacggcggcacgtgtgtagatggagtagaacaatatacttgccgatgcacct caagctttgggggtacaaactgtgaacaagatatacagccgcctgtggtcgagaactgtcccgcggacatagttgaaaac acagctgagcatactttaagaattaactggacagcgccattattctatgatcctcttggaaatgatgttgacatatcaac aaattacccgtcatcagaatggaaatttcattggggagatttcacagtccaatattctgctttaaaaccatcgaacggat tacgcactgagtgtatatttaacatttccttgcggcctcatccctgtgaacgtctcagtgtcccttctcatggagctgtt gtatgtaatggttggaagaaggattatggggagttttgtatacagttttgtggctataaccgcacagtcagtcagcagta cgatcttagacagtggtatgtatgtggtgctagtggagcgtggattgcagcaggacctccaccaaactgtacagatcgaa taacaactcagatggaccttcaccaagtagcccatctccatttccaatcatgtctcgattccaataccattaggaatact ttcatcaatgtgcttcgattctctaattataagcacttttgtgctgagcacatggatgagtgtaaagaagaaaatgttga aataaactgttggtga |
|
Protein
| Protein ID | pfu_aug2.0_3872.1_09241.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3872.1_09241.t1 MNDMMSIRSSHTLYMLKNYKQLLYLQLLLYAPLLEAGRASTWDFCNCYWGTWDPWSSCTRTCGGGSQYRTRVVWHRDVPE CDGFHFCASNDMGSEWQICNTQCQNGGTFFTSCICQTGFYGTCCEHEVTCGDPGGVPNGVRTGSSYTYSSVLTYACNTGY NMTSGDSSLQCSSTGLWSGVKPTCRFVNTCNSNPCQNGGTCVDGVEQYTCRCTSSFGGTNCEQDIQPPVVENCPADIVEN TAEHTLRINWTAPLFYDPLGNDVDISTNYPSSEWKFHWGDFTVQYSALKPSNGLRTECIFNISLRPHPCERLSVPSHGAV VCNGWKKDYGEFCIQFCGYNRTVSQQYDLRQWYVCGASGAWIAAGPPPNCTDRITTQMDLHQVAHLHFQSCLDSNTIRNT FINVLRFSNYKHFCAEHMDECKEENVEINCW |
|