Gene
| Gene Model ID | pfu_aug2.0_3875.1_19216 |
|---|---|
| Locus | scaffold3875.1 : 43103 ... 52042 : - |
| To GenomeBrowser | scaffold3875.1:43103..52042 |
| Genes list of scaffold | scaffold3875.1 |
| Synonym | pfu_aug1.0_6421.1_52763 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3875.1_19216.t1 | 6 | 1 | zf-H2C2_2 | 28 | 42 | 2.0e-13 | 49.8 | 2.6e-05 | 0.078 | 13.3 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 1 | zf-C2H2 | 32 | 54 | 8.9e-08 | 32.0 | 9.1e-08 | 0.00027 | 21.0 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 1 | zf-C2H2_4 | 32 | 54 | 1.2e-07 | 31.5 | 1.1e-06 | 0.0033 | 17.6 |
| pfu_aug2.0_3875.1_19216.t1 | 6 | 2 | zf-H2C2_2 | 46 | 70 | 2.0e-13 | 49.8 | 4.9e-11 | 1.5e-07 | 31.3 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 2 | zf-C2H2 | 60 | 82 | 8.9e-08 | 32.0 | 1.7e-08 | 5.1e-05 | 23.3 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 2 | zf-C2H2_4 | 60 | 82 | 1.2e-07 | 31.5 | 7.3e-07 | 0.0022 | 18.2 |
| pfu_aug2.0_3875.1_19216.t1 | 6 | 3 | zf-H2C2_2 | 74 | 99 | 2.0e-13 | 49.8 | 3.6e-09 | 1.1e-05 | 25.4 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 3 | zf-C2H2 | 88 | 111 | 8.9e-08 | 32.0 | 0.0013 | 3.8 | 8.0 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 3 | zf-C2H2_4 | 88 | 111 | 1.2e-07 | 31.5 | 0.00015 | 0.45 | 10.9 |
| pfu_aug2.0_3875.1_19216.t1 | 6 | 4 | zf-H2C2_2 | 309 | 314 | 2.0e-13 | 49.8 | 5.0 | 15000.0 | -4.2 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 4 | zf-C2H2_4 | 310 | 314 | 1.2e-07 | 31.5 | 5.0 | 15000.0 | -4.0 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 4 | zf-C2H2 | 311 | 317 | 8.9e-08 | 32.0 | 4.7 | 14000.0 | -3.2 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 5 | zf-C2H2 | 341 | 355 | 8.9e-08 | 32.0 | 0.25 | 730.0 | 0.8 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 5 | zf-C2H2_4 | 341 | 355 | 1.2e-07 | 31.5 | 0.24 | 710.0 | 0.9 |
| pfu_aug2.0_3875.1_19216.t1 | 6 | 5 | zf-H2C2_2 | 360 | 366 | 2.0e-13 | 49.8 | 0.057 | 170.0 | 2.7 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 6 | zf-C2H2 | 361 | 383 | 8.9e-08 | 32.0 | 0.57 | 1700.0 | -0.3 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 6 | zf-C2H2_4 | 361 | 380 | 1.2e-07 | 31.5 | 0.47 | 1400.0 | 0.0 |
| pfu_aug2.0_3875.1_19216.t1 | 6 | 6 | zf-H2C2_2 | 379 | 396 | 2.0e-13 | 49.8 | 0.02 | 59.0 | 4.2 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 7 | zf-C2H2_4 | 390 | 412 | 1.2e-07 | 31.5 | 0.00041 | 1.2 | 9.6 |
| pfu_aug2.0_3875.1_19216.t1 | 7 | 7 | zf-C2H2 | 391 | 412 | 8.9e-08 | 32.0 | 0.0027 | 8.1 | 7.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3875.1_19216.t1 | gi|524881229|ref|XP_005097269.1| | PREDICTED: zinc finger protein 271-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_3875.1_19216.t1 | gi|524908678|ref|XP_005109431.1| | PREDICTED: ikaros family zinc finger protein-like [Aplysia californica] | 2.0e-32 |
| pfu_aug2.0_3875.1_19216.t1 | gi|641661521|ref|XP_008181914.1| | PREDICTED: protein krueppel-like [Acyrthosiphon pisum] | 2.0e-23 |
| pfu_aug2.0_3875.1_19216.t1 | gi|675607588|ref|XP_008947695.1| | PREDICTED: zinc finger protein 135-like, partial [Merops nubicus] | 3.0e-23 |
| pfu_aug2.0_3875.1_19216.t1 | gi|242000396|ref|XP_002434841.1| | zinc finger protein, putative [Ixodes scapularis] | 3.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_3875.1_19216.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3875.1_19216.t1 tttacttataaaatggactacaacatgctcgagtccagtaccccagtggatatgggcacaggtctgttaccaggatatat ggtggagaaaccgtttgagtgtaacgtctgttacaaacgattctcacagaaagcccatttaaccacgcataggaggactc atactggagaaaaaccatatgcctgccatatatgtaacaaacgatttgcccagtcatcacacctgaatacacataaaagg atacatacaggtgagaagccgttttactgtgctgtgtgctatatgggatttgttaacaagaagagactggagcttcacct tcaggatgtacataagtttgatcagagtatgttaaagggagacgatgtagaccccgcccaagacaatcccctctcctttg tggatttcgtaccagataactccccttcaatggttggtacaggacaaggattgcataatataatggactctccacaaagt attgaaccggcaatatcagggagtcatcgtcgtaaacctatggtcgtcagtagattcagcagcgaggaacctagtggcac tatgatcatgggtctgcctcaggactttgtggaggatggagaaggtatgctgagtaatataaagacagagcatggtgtgc cagaggactgtatgggggaactgaagaaggaaaacattggtcagggtaaacatgacgaggatggtgatgtagataaaatt ccttctaccagtagtgctagtaagatatgtgaggactcgttaaatgatgatgcagtatgtggtgtgagtacggcagattg taataatgaagtatcggctgatgaggcagcaagtgttaccagtgagagcaatctgtccgggtctgaacaaagcctgtcat ctgcccataaaaaatccatgctttctcaaggatctggtcaaaatagacgtcactgccgaaaacgaatgagaacatccggt attaatagcttcaaaatgtcaagactgtcacattctcctattggtactaactccagagtgtgtttggttaactttacaag tgatgaccttttgactcatatgatgtcccgtgatgacgtgtataagtgtgacttttgttgtattatattccaagatgctg ctatgtatcatctccatcgaagtatgcatgacaaaatggacatacgatgctgtaataattgtggaaagctagccaatgat agatatgatttcattgcacactttctcagtgaacataagtga |
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Protein
| Protein ID | pfu_aug2.0_3875.1_19216.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3875.1_19216.t1 FTYKMDYNMLESSTPVDMGTGLLPGYMVEKPFECNVCYKRFSQKAHLTTHRRTHTGEKPYACHICNKRFAQSSHLNTHKR IHTGEKPFYCAVCYMGFVNKKRLELHLQDVHKFDQSMLKGDDVDPAQDNPLSFVDFVPDNSPSMVGTGQGLHNIMDSPQS IEPAISGSHRRKPMVVSRFSSEEPSGTMIMGLPQDFVEDGEGMLSNIKTEHGVPEDCMGELKKENIGQGKHDEDGDVDKI PSTSSASKICEDSLNDDAVCGVSTADCNNEVSADEAASVTSESNLSGSEQSLSSAHKKSMLSQGSGQNRRHCRKRMRTSG INSFKMSRLSHSPIGTNSRVCLVNFTSDDLLTHMMSRDDVYKCDFCCIIFQDAAMYHLHRSMHDKMDIRCCNNCGKLAND RYDFIAHFLSEHK |
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