Gene
| Gene Model ID | pfu_aug2.0_388.1_27330 |
|---|---|
| Locus | scaffold388.1 : 122556 ... 143132 : + |
| To GenomeBrowser | scaffold388.1:122556..143132 |
| Genes list of scaffold | scaffold388.1 |
| Synonym | pfu_aug1.0_13130.1_39449 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_388.1_27330.t2 | 2 | 1 | DNA_mis_repair | 154 | 274 | 5.5e-23 | 80.6 | 2.0e-26 | 1.0e-22 | 79.8 |
| pfu_aug2.0_388.1_27330.t2 | 2 | 1 | HMG_box | 268 | 292 | 3.3e-07 | 30.4 | 0.17 | 840.0 | 0.3 |
| pfu_aug2.0_388.1_27330.t2 | 2 | 2 | DNA_mis_repair | 489 | 510 | 5.5e-23 | 80.6 | 1.4 | 7100.0 | -3.6 |
| pfu_aug2.0_388.1_27330.t2 | 2 | 2 | HMG_box | 654 | 708 | 3.3e-07 | 30.4 | 1.1e-09 | 5.3e-06 | 26.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_388.1_27330.t2 | gi|156406466|ref|XP_001641066.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_388.1_27330.t2 | gi|664734360|ref|XP_008524395.1| | PREDICTED: PMS1 protein homolog 1-like [Equus przewalskii] | 0.0 |
| pfu_aug2.0_388.1_27330.t2 | gi|755759905|ref|XP_011283729.1| | PREDICTED: PMS1 protein homolog 1 isoform X4 [Felis catus] | 0.0 |
| pfu_aug2.0_388.1_27330.t2 | gi|755759901|ref|XP_011283728.1| | PREDICTED: PMS1 protein homolog 1 isoform X3 [Felis catus] | 0.0 |
| pfu_aug2.0_388.1_27330.t2 | gi|591338343|ref|XP_007094738.1| | PREDICTED: PMS1 protein homolog 1 isoform X7 [Panthera tigris altaica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_388.1_27330.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_388.1_27330.t1 atggcatatggtattatctgtcctaaactacgactgacactgcggaacaataaagatattatctggcagaaaaatcctgt gtcagagatgaatgaagctttagcaatgttggggagagatataatcagtaaccttgaacacagagaatttataaatgatg aaagcaatgttcacatggatttcttcttgcctaagccatattgtaaggaaaaccatctcagcagatcctccaatgacaga tgctttacctttataaataaacgaccagttactaataaaaacattgaaaagttgatgcgtcagtacatagagtgtgaacc tggtagatggccggtatatgtagttaccatagatctcaaccctagtgatgttgatgttaatgtagaacctaacaaaacgc aggtcttcatgcaaccaaaggactttgtaattgaaagcatcagaggagttttagaagaaatgtatggaacagtaagtgat cggaaaaagaaagaacatcatggaaatgctcaggaggatatggtagtaaagaatggacatacatttgatagaaattctga attatcatccataataacaaataatgacagctgtaagacagaagttagaatagtatcagttaatgactgctctaagttag aatctgacattccagttttcaaacttgacagtgttggtcatgtatctaaatcattcagggaaatttcacgtacagagaat tgtgaggaaactggaagtaaaaaagaaaaagaagatgaagtaaccatgcaaagttgtgctagaaatgacacttctaagga cagctgtggtcctctaggagagacaattaccagtcgtgatagccaaaagagtgaaagacactcaagtgacaacaccaatc cagtgctgtctcagcatttcaatgttgtcagtacagatattagtgataggactttgttagatgttgtagcagacacacag caggattctgatagtacagaggttagggataggacttttttagaagtcgtagatggtactccccaggattctgacaaaga ctgcgtactgacacagactgtatctggatgctttgacatagcaaatccagaccttaaacatattatagacctatcagatg acgatgaagaagttgattcaactaaaaaggaggtgcaaactcatacttctggaacgaccaatcaaagtgtaagcaaagaa tcaacaataggattggagactagcgttgtagatagtggagatacctcggtgaccaatagaaatggaaacgtagaatcatc ggtaggattggaggatagtgttgttgatatcggagatgattcagttactgagttattcaagagatgggatgagaatgacc cttttaataccactgaagctattttaagtgcatgtacctcagacagtaccatattaaaggatggtcaatggagtaaggga cagggactgaaaagctcatccggggatgttatacaaccagtatctttgttatgtggtggaaaaagacctctgtcaccatc tatatcaacttccagtagttcacctgccaagaaaatcaaactgttgtcatctaattctaatatgacaaatggagagtcag ccaaaagaaatattacagcctttgaaatatattctaaggccgtcacacctaaggtgataggagaatttccaaataaggat gtggagtatatatcccaggtaatacaggagagatggatctgtctgccagcaggggagaaaactcagtatgaactaagggc tggagcagcaggatcacatcagaaagagagacaaaagaaaacacctgcaaagtccctaagcaaacttaaccacaaaataa aggaacctgcgtctgtcactatcaaggaacaattacttaaggcttccaagtccaatagtaagatggtgacagagaaaaaa gtggacttccatatgaaggaactcaagcagatctttcagagaaagacaaatggaagccagacagtgtgtcctcgtgaaac tttgctgattggtccattaaaatcatgtggtgtgtggatatgtcaccatggaaaccagattcagctgttgaaccctcatc gtatccaagagactgtcatattccataatctcatgtcaaatcatgttctacccactcaaatcctggaaaaacccattccc ataacaaaaagtcgtcttggagacaatctttggaggtcgttagagaagctagctagagaacatcagacagatcaggccta cagtgtactcggtgacgtcagactggtcaataatggcattcagatacagttctactttgacactagttctggggagttgt tctgtaagctgacagggttatgccccttgattcctatgtatggtatggacgacatttcagagattctcgatctcatctct aacactggagccgatactgtatcaaaagccagacccctcaaaatactcaactacctacagggggaggcagtcagaatggc caggcagctaaccaaggatcaaagtaaagaggagatactgatgttgttagaatcaatacgtgacactctacctgaaaatt gtgatagctgctttcatggaaaactacttcttctatga |
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| Transcript ID | pfu_aug2.0_388.1_27330.t2 |
| Definition | - |
>pfu_aug2.0_388.1_27330.t2 atggaagattttggacttggaaaggtagaggtgagagataatggatctggtataccctccacccacgtaccatttattgc caaaagataccacaccactaagatcaccgccttctccgatcttgaacatctaacaacctatggcttcagaggagaggctt tgggtaatcttagagttatggcccttggacttagcaaatttcatgaaaatctcagtttttccggatttttcttcggttct actgcaggaacaacaatatcagctgttgagctttttaagaatctgcctgttaggaggaactactacaaaactaacaaaag gaaaaaagaggagctgaaaaaaatagaggacctgctgatggcatatggtattatctgtcctaaactacgactgacactgc ggaacaataaagatattatctggcagaaaaatcctgtgtcagagatgaatgaagctttagcaatgttggggagagatata atcagtaaccttgaacacagagaatttataaatgatgaaagcaatgttcacatggatttcttcttgcctaagccatattg taaggaaaaccatctcagcagatcctccaatgacagatgctttacctttataaataaacgaccagttactaataaaaaca ttgaaaagttgatgcgtcagtacatagagtgtgaacctggtagatggccggtatatgtagttaccatagatctcaaccct agtgatgttgatgttaatgtagaacctaacaaaacgcaggtcttcatgcaaccaaaggactttgtaattgaaagcatcag aggagttttagaagaaatgtatggaacagtaagtgatcggaaaaagaaagaacatcatggaaatgctcaggaggatatgg tagtaaagaatggacatacatttgatagaaattctgaattatcatccataataacaaataatgacagctgtaagacagaa gttagaatagtatcagttaatgactgctctaagttagaatctgacattccagttttcaaacttgacagtgttggtcatgt atctaaatcattcagggaaatttcacgtacagagaattgtgaggaaactggaagtaaaaaagaaaaagaagatgaagtaa ccatgcaaagttgtgctagaaatgacacttctaaggacagctgtggtcctctaggagagacaattaccagtcgtgatagc caaaagagtgaaagacactcaagtgacaacaccaatccagtgctgtctcagcatttcaatgttgtcagtacagatattag tgataggactttgttagatgttgtagcagacacacagcaggattctgatagtacagaggttagggataggacttttttag aagtcgtagatggtactccccaggattctgacaaagactgcgtactgacacagactgtatctggatgctttgacatagca aatccagaccttaaacatattatagacctatcagatgacgatgaagaagttgattcaactaaaaaggaggtgcaaactca tacttctggaacgaccaatcaaagtgtaagcaaagaatcaacaataggattggagactagcgttgtagatagtggagata cctcggtgaccaatagaaatggaaacgtagaatcatcggtaggattggaggatagtgttgttgatatcggagatgattca gttactgagttattcaagagatgggatgagaatgacccttttaataccactgaagctattttaagtgcatgtacctcaga cagtaccatattaaaggatggtcaatggagtaagggacagggactgaaaagctcatccggggatgttatacaaccagtat ctttgttatgtggtggaaaaagacctctgtcaccatctatatcaacttccagtagttcacctgccaagaaaatcaaactg ttgtcatctaattctaatatgacaaatggagagtcagccaaaagaaatattacagcctttgaaatatattctaaggccgt cacacctaaggtgataggagaatttccaaataaggatgtggagtatatatcccaggtaatacaggagagatggatctgtc tgccagcaggggagaaaactcagtatgaactaagggctggagcagcaggatcacatcagaaagagagacaaaagaaaaca cctgcaaagtccctaagcaaacttaaccacaaaataaaggaacctgcgtctgtcactatcaaggaacaattacttaaggc ttccaagtccaatagtaagatggtgacagagaaaaaagtggacttccatatgaaggaactcaagcagatctttcagagaa agacaaatggaagccagacagtgtgtcctcgtgaaactttgctgattggtccattaaaatcatgtggtgtgtggatatgt caccatggaaaccagattcagctgttgaaccctcatcgtatccaagagactgtcatattccataatctcatgtcaaatca tgttctacccactcaaatcctggaaaaacccattcccataacaaaaagtcgtcttggagacaatctttggaggtcgttag agaagctagctagagaacatcagacagatcaggcctacagtgtactcggtgacgtcagactggtcaataatggcattcag atacagttctactttgacactagttctggggagttgttctgtaagctgacagggttatgccccttgattcctatgtatgg tatggacgacatttcagagattctcgatctcatctctaacactggagccgatactgtatcaaaagccagacccctcaaaa tactcaactacctacagggggaggcagtcagaatggccaggcagctaaccaaggatcaaagtaaagaggagatactgatg ttgttagaatcaatacgtgacactctacctgaaaattgtgatagctgctttcatggaaaactacttcttctatga |
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Protein
| Protein ID | pfu_aug2.0_388.1_27330.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_388.1_27330.t1 MAYGIICPKLRLTLRNNKDIIWQKNPVSEMNEALAMLGRDIISNLEHREFINDESNVHMDFFLPKPYCKENHLSRSSNDR CFTFINKRPVTNKNIEKLMRQYIECEPGRWPVYVVTIDLNPSDVDVNVEPNKTQVFMQPKDFVIESIRGVLEEMYGTVSD RKKKEHHGNAQEDMVVKNGHTFDRNSELSSIITNNDSCKTEVRIVSVNDCSKLESDIPVFKLDSVGHVSKSFREISRTEN CEETGSKKEKEDEVTMQSCARNDTSKDSCGPLGETITSRDSQKSERHSSDNTNPVLSQHFNVVSTDISDRTLLDVVADTQ QDSDSTEVRDRTFLEVVDGTPQDSDKDCVLTQTVSGCFDIANPDLKHIIDLSDDDEEVDSTKKEVQTHTSGTTNQSVSKE STIGLETSVVDSGDTSVTNRNGNVESSVGLEDSVVDIGDDSVTELFKRWDENDPFNTTEAILSACTSDSTILKDGQWSKG QGLKSSSGDVIQPVSLLCGGKRPLSPSISTSSSSPAKKIKLLSSNSNMTNGESAKRNITAFEIYSKAVTPKVIGEFPNKD VEYISQVIQERWICLPAGEKTQYELRAGAAGSHQKERQKKTPAKSLSKLNHKIKEPASVTIKEQLLKASKSNSKMVTEKK VDFHMKELKQIFQRKTNGSQTVCPRETLLIGPLKSCGVWICHHGNQIQLLNPHRIQETVIFHNLMSNHVLPTQILEKPIP ITKSRLGDNLWRSLEKLAREHQTDQAYSVLGDVRLVNNGIQIQFYFDTSSGELFCKLTGLCPLIPMYGMDDISEILDLIS NTGADTVSKARPLKILNYLQGEAVRMARQLTKDQSKEEILMLLESIRDTLPENCDSCFHGKLLLL |
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| Protein ID | pfu_aug2.0_388.1_27330.t2 |
| Definition | - |
>pfu_aug2.0_388.1_27330.t2 MEDFGLGKVEVRDNGSGIPSTHVPFIAKRYHTTKITAFSDLEHLTTYGFRGEALGNLRVMALGLSKFHENLSFSGFFFGS TAGTTISAVELFKNLPVRRNYYKTNKRKKEELKKIEDLLMAYGIICPKLRLTLRNNKDIIWQKNPVSEMNEALAMLGRDI ISNLEHREFINDESNVHMDFFLPKPYCKENHLSRSSNDRCFTFINKRPVTNKNIEKLMRQYIECEPGRWPVYVVTIDLNP SDVDVNVEPNKTQVFMQPKDFVIESIRGVLEEMYGTVSDRKKKEHHGNAQEDMVVKNGHTFDRNSELSSIITNNDSCKTE VRIVSVNDCSKLESDIPVFKLDSVGHVSKSFREISRTENCEETGSKKEKEDEVTMQSCARNDTSKDSCGPLGETITSRDS QKSERHSSDNTNPVLSQHFNVVSTDISDRTLLDVVADTQQDSDSTEVRDRTFLEVVDGTPQDSDKDCVLTQTVSGCFDIA NPDLKHIIDLSDDDEEVDSTKKEVQTHTSGTTNQSVSKESTIGLETSVVDSGDTSVTNRNGNVESSVGLEDSVVDIGDDS VTELFKRWDENDPFNTTEAILSACTSDSTILKDGQWSKGQGLKSSSGDVIQPVSLLCGGKRPLSPSISTSSSSPAKKIKL LSSNSNMTNGESAKRNITAFEIYSKAVTPKVIGEFPNKDVEYISQVIQERWICLPAGEKTQYELRAGAAGSHQKERQKKT PAKSLSKLNHKIKEPASVTIKEQLLKASKSNSKMVTEKKVDFHMKELKQIFQRKTNGSQTVCPRETLLIGPLKSCGVWIC HHGNQIQLLNPHRIQETVIFHNLMSNHVLPTQILEKPIPITKSRLGDNLWRSLEKLAREHQTDQAYSVLGDVRLVNNGIQ IQFYFDTSSGELFCKLTGLCPLIPMYGMDDISEILDLISNTGADTVSKARPLKILNYLQGEAVRMARQLTKDQSKEEILM LLESIRDTLPENCDSCFHGKLLLL |
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