Gene
| Gene Model ID | pfu_aug2.0_388.1_27339 |
|---|---|
| Locus | scaffold388.1 : 327745 ... 334013 : + |
| To GenomeBrowser | scaffold388.1:327745..334013 |
| Genes list of scaffold | scaffold388.1 |
| Synonym | pfu_aug1.0_16492.1_61619 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_388.1_27339.t1 | 2 | 1 | RVT_1 | 605 | 697 | 2.6e-22 | 79.2 | 1.0e-08 | 3.1e-05 | 23.4 |
| pfu_aug2.0_388.1_27339.t1 | 2 | 2 | RVT_1 | 729 | 817 | 2.6e-22 | 79.2 | 1.3e-17 | 3.8e-14 | 52.5 |
| pfu_aug2.0_388.1_27339.t1 | 1 | 1 | rve | 1171 | 1230 | 1.5e-13 | 50.8 | 1.3e-16 | 4.0e-13 | 49.5 |
Transcript
| Transcript ID | pfu_aug2.0_388.1_27339.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_388.1_27339.t1 atggctgatagtccggaagtggctgcgactgtaagtaaaccagtaattttaccagaccattttactggttcaggtgaaga ggaatggcgagactggttttcctcattcaaagttgtttgtgaaataaataaatggacagatgaaatgaaatgtaagttct tgggactaagattaaaaggacatgcccttaaagtttttcgagagttggatgaagacacaagaaacaattggcagagattg caagaaattttgacaaagaggttagaatcatcacaaaaccctgaattgtacaagtcccagttactatcaagaaaaagaga acaaggagagagtatcactacactgggaaatgctgtgagatccttggcccgcaaggcgtatccggctctagacgcgcaaa cgcgggatgaattagcgagagaccaactaatacgtgcactaccaaatcaaaaacttgttctgcacatccgacancgagag ttggatgaagacacaagaaacaattggcagagattgcaagaaattttgacaaagaggttagaatcatcacaaaaccctga attgtacaagtcccagttactatcaagaaaaagagaacaaggagagagtatcactacactgggaaatgctgtgagatcct tggcccgcaaggcgtatccggctctagacgcgcaaacgcgggatgaattagcgagagaccaactaatacgtgcactacca aatcaaaaacttgttctgcacatccgaaatcacatgcccaaaacattggatgatgccatgaaaatggcaattgagtggga ggcaattgaaagtgaagtaagtagtagagaagccgctatgggtgttcatttaacggcacatcaacctgaattgagtgcag caggttgcggcacacaatctcagggattgccaaaccagaaatcaaggccaaccatctggtgtttgttggaaatgtgggga tccatctcatataagagcaaactgtccgttactcaagtttccgggaaacggtcagtagctggagttgtgggtcaaactcc agcatcaacatcatatgacccgtgcaataatacttcattgaattgttctggatccattgatggtgtagacacagatatgt taatagatacaggatctgtctacactcttgtaaattatgatctattcaagaaaatacaagaaaaaaggagggaaagcata tttttggcaaagtttgagaagaatttagtttctgcaaatggtgagaaaattgatattgaaggatgttttgaaccgcttat tgtggtgggacacattatctgtaggcataaggttgtgattacaagagagctggtgaacagtcgtgacggaaaaatgccgg ttcgcatggtgaatttatcagatgaaagtgtcaccatctataaaaatactaccattggaaccctagaaccgaacgagtca ccaatgctatgtggcgtgggggaagcaggttgcagcccccctgtatgtatagcttctataaatacatcaagagcaagtga aatactcagaaaaattaaccttgatgacactgtggtagaaggaaacgagaaagaacagttaatcaagctgattactgaat accaggatgttttctccttagggagcaatgatattggtcgagctgacaaagttaaacatcgaattgacacagggagtgct ctccctatacgtcaagcaccacgtcgggttccagttgcaatgaaatatgaggtcaaaaaccacattgcggacatgctgag taatggcattattcgtgagtcgtgtagtccttgggcttcccctattgtcctcgtcaagaagaaaggtgggggaacacggt tctgtatcgattacaggaaattgaatagtgtgacaaagagagatgcataccctttgccacgaatggatgatgcattagaa accttgtctggagccaagtacttctccacactcgacctcataagtgggtactggcaagtagaggtcgatgaaaatgatcg cgacaaaacagcgttcgccactcacatggggctctatgaatttaatgtaatgccgttcggactttgtggagcaccaagta ctttccagcgtttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnntcgttcgccactaacatggggctctatgaatttaatgtaatgccgttcggactttgtggagcaccaagtac tttccagcggttgatggaagcagttttaggtggaatgcaatgggaatcttgcatgatctatttggacgacattattgtgt ttggacggtcttttcaggagcataacaggagactgcaagaggttttcaaaaaattgaggaaggctggtctgaaaatgaaa ccacagaaatgccagttcttgcggaatgaattgcgatatttaggccatattgtttctccagatggtatacgaaccgatcc ggagaaaacaaaagctgtgaaagaatggcctatcccattgagtgcagaagaagtccggcagtttctcggattggcatcat actatcgtcgttttatccgcaattttgcaaatttagcagccccattgcataagatatcagcaaacaacaatagtttcaaa tggtcagaggaatgtactgtgtcattcaacaaactaaagcatgctcttacttcagcgcctgtactatcatatccaaatgt tgaaggcacttttgttcttgacacagatgccagcgatcaagctattgatggtgttctgtcacaaatacaggacgggcaag aaagggtgatatgctacggttgcaaagtactatcgaaacctgagaaaaactactgtgtgacccgacaggaactgttggct attatttacttcctacaacaatttcgacattatttgcttgggcgtagattcaaaatccgcacagatcataaagccctgac atggttaaaaagttttcgagagcccgaaggtcaaatggcgcgattgcagttacagctagcggagtacgatttttctattg agcacagggaaggtcggaagcactcgaatgcagacgccttatcgaggataccctgtaagcaatgtggctggagtacaggt ggtgatgttgtatcctctgttggtcagaagctggaggttgaccggcttcttatagagcaggaaaaagattcagacatagc tccaatcttactgtggaaaagaacaaggcttagcagaccggatagttcactggttgagggggcatctcctgtgacgaagg agatatggtctcaatggaaccaacttcttatagacaaaggtgctttgtacaagcaaacagatgaagctgtctcaggggca aagtatcaggcagtggttcccagaagtcttcagcagaacgtgataaaattgaaaaatgatcttcctagtacaggacattt ggggtttgataaaacatgggaaagactaacggcgagattttattggccagacatgaagaaagatgtagaggagtttgcgt gcagatttggtatgccgatgacaattcacacagaccaagggacagatttccagtcaaagttgctgtcggagatatacaaa atgatgggcatagaacggacaagaacttcgccatatcacccccagtgcgatggtcaagttgaaagatttaatagaaccct gttagacatgctaagagtgaagaaaggacaaagcactaaacttcattccccttggaagggaccatatgttgttcttgcaa agctcagcgacttgaactacagaataaagttggtaggggggaggaagaagaaggtagttcatattaacaggatgaagccc tatgtcaacccggtagctcaagatgatagagatactcagagaactcaagctgcccaggaaattgatgcaaacaatcatca gtcatcaagctgccatgacgaggatttattttctgaagatgaatccattggccaagggaacactgaagcatttcaagacc ttggtcgtgaacagatttcagatgaagttgtcgacgatttgcagttgtcgacaggagagcatcaggccgaggctctccaa aatatagatagctccagcagtggaacagatgagggagcagtcgggcgtctccagagagttagacgcccaacaaaatatct agaaaattacgaaacggaacttgactaa |
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Protein
| Protein ID | pfu_aug2.0_388.1_27339.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_388.1_27339.t1 MADSPEVAATVSKPVILPDHFTGSGEEEWRDWFSSFKVVCEINKWTDEMKCKFLGLRLKGHALKVFRELDEDTRNNWQRL QEILTKRLESSQNPELYKSQLLSRKREQGESITTLGNAVRSLARKAYPALDAQTRDELARDQLIRALPNQKLVLHIRXRE LDEDTRNNWQRLQEILTKRLESSQNPELYKSQLLSRKREQGESITTLGNAVRSLARKAYPALDAQTRDELARDQLIRALP NQKLVLHIRNHMPKTLDDAMKMAIEWEAIESEVSSREAAMGVHLTAHQPELSAAGCGTQSQGLPNQKSRPTIWCLLEMWG SISYKSKLSVTQVSGKRSVAGVVGQTPASTSYDPCNNTSLNCSGSIDGVDTDMLIDTGSVYTLVNYDLFKKIQEKRRESI FLAKFEKNLVSANGEKIDIEGCFEPLIVVGHIICRHKVVITRELVNSRDGKMPVRMVNLSDESVTIYKNTTIGTLEPNES PMLCGVGEAGCSPPVCIASINTSRASEILRKINLDDTVVEGNEKEQLIKLITEYQDVFSLGSNDIGRADKVKHRIDTGSA LPIRQAPRRVPVAMKYEVKNHIADMLSNGIIRESCSPWASPIVLVKKKGGGTRFCIDYRKLNSVTKRDAYPLPRMDDALE TLSGAKYFSTLDLISGYWQVEVDENDRDKTAFATHMGLYEFNVMPFGLCGAPSTFQRXXXXXXXXXXXXXXXXXXXXXXX XXXSFATNMGLYEFNVMPFGLCGAPSTFQRLMEAVLGGMQWESCMIYLDDIIVFGRSFQEHNRRLQEVFKKLRKAGLKMK PQKCQFLRNELRYLGHIVSPDGIRTDPEKTKAVKEWPIPLSAEEVRQFLGLASYYRRFIRNFANLAAPLHKISANNNSFK WSEECTVSFNKLKHALTSAPVLSYPNVEGTFVLDTDASDQAIDGVLSQIQDGQERVICYGCKVLSKPEKNYCVTRQELLA IIYFLQQFRHYLLGRRFKIRTDHKALTWLKSFREPEGQMARLQLQLAEYDFSIEHREGRKHSNADALSRIPCKQCGWSTG GDVVSSVGQKLEVDRLLIEQEKDSDIAPILLWKRTRLSRPDSSLVEGASPVTKEIWSQWNQLLIDKGALYKQTDEAVSGA KYQAVVPRSLQQNVIKLKNDLPSTGHLGFDKTWERLTARFYWPDMKKDVEEFACRFGMPMTIHTDQGTDFQSKLLSEIYK MMGIERTRTSPYHPQCDGQVERFNRTLLDMLRVKKGQSTKLHSPWKGPYVVLAKLSDLNYRIKLVGGRKKKVVHINRMKP YVNPVAQDDRDTQRTQAAQEIDANNHQSSSCHDEDLFSEDESIGQGNTEAFQDLGREQISDEVVDDLQLSTGEHQAEALQ NIDSSSSGTDEGAVGRLQRVRRPTKYLENYETELD |
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