Gene
| Gene Model ID | pfu_aug2.0_3883.1_12538 |
|---|---|
| Locus | scaffold3883.1 : 1816 ... 9897 : + |
| To GenomeBrowser | scaffold3883.1:1816..9897 |
| Genes list of scaffold | scaffold3883.1 |
| Synonym | pfu_aug1.0_4759.1_45029 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| potassium voltage-gated channel subfamily c member 1-like | GO:0005216 GO:0006811 GO:0016020 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3883.1_12538.t1 | 1 | 1 | BTB_2 | 68 | 158 | 1.2e-22 | 79.8 | 1.1e-25 | 4.2e-22 | 78.1 |
| pfu_aug2.0_3883.1_12538.t1 | 2 | 1 | Ion_trans | 215 | 235 | 1.9e-23 | 82.7 | 1.0 | 3900.0 | -3.2 |
| pfu_aug2.0_3883.1_12538.t1 | 3 | 1 | Ion_trans_2 | 219 | 236 | 2.4e-09 | 36.7 | 0.2 | 720.0 | -0.1 |
| pfu_aug2.0_3883.1_12538.t1 | 2 | 2 | Ion_trans | 280 | 459 | 1.9e-23 | 82.7 | 5.2e-27 | 1.9e-23 | 82.7 |
| pfu_aug2.0_3883.1_12538.t1 | 3 | 2 | Ion_trans_2 | 321 | 342 | 2.4e-09 | 36.7 | 2.9 | 11000.0 | -3.8 |
| pfu_aug2.0_3883.1_12538.t1 | 3 | 3 | Ion_trans_2 | 387 | 464 | 2.4e-09 | 36.7 | 6.4e-13 | 2.4e-09 | 36.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3883.1_12538.t1 | gi|676428096|ref|XP_009045162.1| | hypothetical protein LOTGIDRAFT_171056 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_3883.1_12538.t1 | gi|556980035|ref|XP_005996785.1| | PREDICTED: potassium voltage-gated channel subfamily C member 1-like isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_3883.1_12538.t1 | gi|156380623|ref|XP_001631867.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_3883.1_12538.t1 | gi|530658468|ref|XP_005314713.1| | PREDICTED: potassium voltage-gated channel subfamily C member 1-like [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_3883.1_12538.t1 | gi|742240465|ref|XP_010904182.1| | PREDICTED: potassium voltage-gated channel subfamily C member 1-like isoform X3 [Esox lucius] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_3883.1_12538.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3883.1_12538.t1 atggctttacatcacccattgcagaccaagacaaaggcgaagaaatccgtggctttttgtctacctgatattatgtctgg gacacagagcaacttgaaacctccacccatggaaatatcgcccaatccaacggacgacgacgatagtgatgcgaataatg acgacgaagaggaaaatttggatgatcctaaagaggatatgatcatattgaatgtcggtgggatacggtacgagacaagg ttacagacgctcaagaaaaataacggcaaaaattcgaggcttctggatattgcggaagaatttgaacggactggaaagag tgaattctactttgacaggcaatcggagtttttcccttacattttgaatttctatagaacaggaaagttacatctgccat taaatgtatgtggacctttgatcaaagaggaactgaacttctggcagatagacgacaaggatatagaacagtgttgctgg gtacattacatcaaatacgaggaaaccttagaaatgatagatatgtttgaaaaggatgataagcatcatcgcctagcaac aaaaagaataagcaaggacgcatcatggtttcaaaagaaacgtcccaaaatttggagatttatgcaggattcttattctt caaaaccagcaatgtgttatgccttcatctccttgtcagtggtcttactcagtatcacagtttttatgatagaaaccttg cccttcttcgaatccatctacgtacactccaaaaaggacaggagaaacgtaaccacccaagacttacggttggaaataga catattcggaaacacctcgcctcttgccattctgttgatcatagatcattcgtgtaacttgttctttctatgtgaactta tggtaaagttgattgctgcgccttataagaagcagtttctgatctcgccgcagacgatagtagaattcgtctgtctaatc ccttattacatcgccattatcatcgttttctaccacccggaacctaaaaatatctttgatctcattagattcatgatgtc attgcgcgtcttacgaatcttccgtttgtttatactcatgaaacatttccttgcccttaagatattgatgtatactatac gagctagcaccaaagaattgtttttgttactacttgttgttctgattggagtggttatatttgcttgtatagtttactac atggaaatgttttcggaccaagagactcagtttgagcatatccctatggcgtgctggtgggcgttagttaccatgacaac agtggggtacggtgacatggtaccgagtaccggacagggttatgccgccggggccgtttgtgcactttgtggtgtgttgg tcatcgcgctctctgttcccgccattgttcaaaacttcacattatattacacgcatgcgcaatcaagacttaaactaaag cagcggaaacgaatctacaggaggaagaaatggtcaaatttgagaaatctcctcaaagatagcgatccttccaaaaatgc ttttgctagaattgtaagcttggcgcgagaggagaacaaaaaacgccgtaagtcagcagcagtggcaccttttacgcaaa acaaagatagcgcggacaaacccgtgacaaagcgaggccggagtcatagcgtggcagcggccgtttctaagagagatgtc tcgggaatattcaaaaggttagctaaaaccccgaacggaaatgccaaagtacaaaatactgaagagaccaagcctgctgc ggagaagctagattttactcagtcttccaaagatttggccaaacaaagcacgtcttctggtgacgttggaaacgagaaaa cccctgaaataccaaagacctctaaagtagaggaaaatgagaaagtattagataaacaaaaagacgatacaagtacgcta gtgccaaaagtcaaacctatttgcaataacataccgtctataagtgtgaattcagaaactagtgagaagaaagccttgcc gacattaaaagaagaaacaaatgaagaaacaaatgataatttcgtctcagagaaatcgtcaatgtattcttttaacttct cacggacgtcttcgttttccaatgattctgtgatacaggagaaaagtgagaaagctaagagtagaagtagagcttcgtcc ctctctgaccggagctacgacagtgacatgtcggacacggagctcagcatggagtttgacaaaactgtcaagtctaaatc tatcactgctaaggacgtctggagtagatttatgaagaagcaaaatgtctga |
|
Protein
| Protein ID | pfu_aug2.0_3883.1_12538.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3883.1_12538.t1 MALHHPLQTKTKAKKSVAFCLPDIMSGTQSNLKPPPMEISPNPTDDDDSDANNDDEEENLDDPKEDMIILNVGGIRYETR LQTLKKNNGKNSRLLDIAEEFERTGKSEFYFDRQSEFFPYILNFYRTGKLHLPLNVCGPLIKEELNFWQIDDKDIEQCCW VHYIKYEETLEMIDMFEKDDKHHRLATKRISKDASWFQKKRPKIWRFMQDSYSSKPAMCYAFISLSVVLLSITVFMIETL PFFESIYVHSKKDRRNVTTQDLRLEIDIFGNTSPLAILLIIDHSCNLFFLCELMVKLIAAPYKKQFLISPQTIVEFVCLI PYYIAIIIVFYHPEPKNIFDLIRFMMSLRVLRIFRLFILMKHFLALKILMYTIRASTKELFLLLLVVLIGVVIFACIVYY MEMFSDQETQFEHIPMACWWALVTMTTVGYGDMVPSTGQGYAAGAVCALCGVLVIALSVPAIVQNFTLYYTHAQSRLKLK QRKRIYRRKKWSNLRNLLKDSDPSKNAFARIVSLAREENKKRRKSAAVAPFTQNKDSADKPVTKRGRSHSVAAAVSKRDV SGIFKRLAKTPNGNAKVQNTEETKPAAEKLDFTQSSKDLAKQSTSSGDVGNEKTPEIPKTSKVEENEKVLDKQKDDTSTL VPKVKPICNNIPSISVNSETSEKKALPTLKEETNEETNDNFVSEKSSMYSFNFSRTSSFSNDSVIQEKSEKAKSRSRASS LSDRSYDSDMSDTELSMEFDKTVKSKSITAKDVWSRFMKKQNV |
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