Gene
| Gene Model ID | pfu_aug2.0_3884.1_15877 |
|---|---|
| Locus | scaffold3884.1 : 28526 ... 36250 : + |
| To GenomeBrowser | scaffold3884.1:28526..36250 |
| Genes list of scaffold | scaffold3884.1 |
| Synonym | pfu_aug1.0_21581.1_11396 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low quality protein: unconventional myosin-vb | GO:0003824 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3884.1_15877.t1 | 3 | 1 | IQ | 66 | 78 | 1.4e-06 | 27.3 | 0.11 | 240.0 | 1.8 |
| pfu_aug2.0_3884.1_15877.t1 | 3 | 2 | IQ | 85 | 103 | 1.4e-06 | 27.3 | 1.1e-08 | 2.3e-05 | 23.6 |
| pfu_aug2.0_3884.1_15877.t1 | 3 | 3 | IQ | 107 | 125 | 1.4e-06 | 27.3 | 0.0023 | 4.8 | 7.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3884.1_15877.t1 | gi|241674439|ref|XP_002400123.1| | mysoin heavy chain, putative [Ixodes scapularis] | 5.0e-37 |
| pfu_aug2.0_3884.1_15877.t1 | gi|558224849|ref|XP_006136797.1| | PREDICTED: LOW QUALITY PROTEIN: unconventional myosin-Vb [Pelodiscus sinensis] | 4.0e-34 |
| pfu_aug2.0_3884.1_15877.t1 | gi|593769803|ref|XP_007123313.1| | PREDICTED: unconventional myosin-Vb-like, partial [Physeter catodon] | 4.0e-33 |
| pfu_aug2.0_3884.1_15877.t1 | gi|548519251|ref|XP_005697249.1| | PREDICTED: LOW QUALITY PROTEIN: unconventional myosin-Vb [Capra hircus] | 6.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_3884.1_15877.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3884.1_15877.t1 atgcacagtttttacgggaaacgagggctgcaaccagaattcagaaagtttggaaaggcttcaaagttcgccgtcattat ttacgtgtcaggagagctgctattgttatacagggactgtaaagtgacatcatttttcaatgaaaatgaagatttattaa atacagtaggtcgcattatagaaaggagaaagaagtctgccatcagagggcactatggaagacgattgttccaacaagag ctgtatgaacaccgagccatccttatacagaagatggtgcgtacatggctggcgaggaagaagtataagatggttctcag aggaatcgttaaactacaaggtcacttcaggaggaggaaggccaaggctgaactcaagaggcttaagattgaggctaagt cagtggaacacataaagaacgtaaacaagggcttagagaataagatcattcagctccagcagaaacttgacggagccact gcaaaacaaagtataccagcatatncgttggaaaaagaaaagaaggaaaagaaagatgttatatcggagaaagataaact gactaaagaacatacacaggttttgtcaaaaatggccgaagagaaatgtaaactaaaggaagaactagatgatgccaatc ataggctacaggaacaggaaaataaactgacagatgctatcaagagtaagatagaggatgagaagagattgattatagcc gagttcgagtctgagaggagccatcatcaaagactggtaaaagaacatgctcgacttcaacaacgattagaaaatctaca aggggaaatgcaggttcttacatcacctcaaggtcataagaggacaccgtctgacatcagtattatgagcctggaatctg tgacaagttctacatcacctgattataaaaatgacgaggatgaacatgaagaaaagcctgtgatagtattgtttgatggg ccattctttatgatgtcatga |
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Protein
| Protein ID | pfu_aug2.0_3884.1_15877.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3884.1_15877.t1 MHSFYGKRGLQPEFRKFGKASKFAVIIYVSGELLLLYRDCKVTSFFNENEDLLNTVGRIIERRKKSAIRGHYGRRLFQQE LYEHRAILIQKMVRTWLARKKYKMVLRGIVKLQGHFRRRKAKAELKRLKIEAKSVEHIKNVNKGLENKIIQLQQKLDGAT AKQSIPAYXLEKEKKEKKDVISEKDKLTKEHTQVLSKMAEEKCKLKEELDDANHRLQEQENKLTDAIKSKIEDEKRLIIA EFESERSHHQRLVKEHARLQQRLENLQGEMQVLTSPQGHKRTPSDISIMSLESVTSSTSPDYKNDEDEHEEKPVIVLFDG PFFMMS |
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