Gene
| Gene Model ID | pfu_aug2.0_39.1_30035 |
|---|---|
| Locus | scaffold39.1 : 1 ... 8595 : - |
| To GenomeBrowser | scaffold39.1:1..8595 |
| Genes list of scaffold | scaffold39.1 |
| Synonym | pfu_aug1.0_85933.1_13359 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_39.1_30035.t1 | 4 | 1 | Nucleos_tra2_N | 4 | 18 | 1.5e-20 | 73.2 | 3.0 | 15000.0 | -5.4 |
| pfu_aug2.0_39.1_30035.t1 | 4 | 2 | Nucleos_tra2_N | 29 | 99 | 1.5e-20 | 73.2 | 3.0e-24 | 1.5e-20 | 73.2 |
| pfu_aug2.0_39.1_30035.t1 | 4 | 3 | Nucleos_tra2_N | 139 | 164 | 1.5e-20 | 73.2 | 0.077 | 380.0 | 1.5 |
| pfu_aug2.0_39.1_30035.t1 | 1 | 1 | Nucleos_tra2_C | 211 | 362 | 8.5e-39 | 133.2 | 3.30006e-42 | 1.7e-38 | 132.2 |
| pfu_aug2.0_39.1_30035.t1 | 4 | 4 | Nucleos_tra2_N | 271 | 286 | 1.5e-20 | 73.2 | 1.4 | 6700.0 | -2.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_39.1_30035.t1 | gi|524865959|ref|XP_005089805.1| | PREDICTED: solute carrier family 28 member 3-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_39.1_30035.t1 | gi|676420899|ref|XP_009043746.1| | hypothetical protein LOTGIDRAFT_103137, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_39.1_30035.t1 | gi|196003092|ref|XP_002111413.1| | hypothetical protein TRIADDRAFT_24504 [Trichoplax adhaerens] | 0.0 |
| pfu_aug2.0_39.1_30035.t1 | gi|507681134|ref|XP_004639472.1| | PREDICTED: solute carrier family 28 member 3 [Octodon degus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_39.1_30035.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30035.t1 atgtgttttgttatactttcgatattgctgtatcttattttcggtgtttttatccgggaaccgtacaacatagtccccgc tgctggtctcgttgtcttcgttctcaccatgttcttcctgtcacgtgatcctcaaaaggtaagctggcgtccagtgtgct ggggactcttactacaattcatctttgccataatcgtgttgaggaccagttggggatatgacgcttttgattggctagga aagcgtgtgttggagtatctggcccacacagactatggcgccagttttatgtttggagctggatttgcagagcactattt tgcgtttaaggtgctgccagttatattctttttcagcgccactattgcaatgttgtattaccttggatggatgcaacttc tcattgaaaagcttgcttttataatgcagtatagcttgggcacaacagctctggaatctttacattctgccatcaacata ttcatcggatggggagaaactacaaccttggtaaaaccattttttgaccagatgtccctatccgagctccataccataat gaccaatggttttgccacagcggccgggagtacactggtcatctatgccctgtatggtgctccggccaatcatctcattt cggcaagcgttatgtcagcacctgccgcgctagccatctctaaattattttggcctgaaatcaagagagagcataagaaa ctacaggacactatcaaatcatacagaatcaagagagaaggtcacaatttgatagacgccgcgtctgctggtgccattgc tgccattccagttgtcgcttacatcttcgccagtgtaattgtattcttctcactccttgactttctgaacacaactttgg cttggatgggggagagggtagggctatcaccaccggattatcctgttcttacttttcagttgatatgctcctatctattt tggccgttggtatttctgatgggcgtggaagccccagactgtactacagtcgcccgtatggtggggataaaaaccttcat caatgagttcctagcttatgaggacctcgggaaagtcatcaggaatagcgaaacattcaaatcattcaacggaagctggc attatgacaacagtaacaacatagtactagagaacaccaacattaccctgtacggcggagttataaca |
|
Protein
| Protein ID | pfu_aug2.0_39.1_30035.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30035.t1 MCFVILSILLYLIFGVFIREPYNIVPAAGLVVFVLTMFFLSRDPQKVSWRPVCWGLLLQFIFAIIVLRTSWGYDAFDWLG KRVLEYLAHTDYGASFMFGAGFAEHYFAFKVLPVIFFFSATIAMLYYLGWMQLLIEKLAFIMQYSLGTTALESLHSAINI FIGWGETTTLVKPFFDQMSLSELHTIMTNGFATAAGSTLVIYALYGAPANHLISASVMSAPAALAISKLFWPEIKREHKK LQDTIKSYRIKREGHNLIDAASAGAIAAIPVVAYIFASVIVFFSLLDFLNTTLAWMGERVGLSPPDYPVLTFQLICSYLF WPLVFLMGVEAPDCTTVARMVGIKTFINEFLAYEDLGKVIRNSETFKSFNGSWHYDNSNNIVLENTNITLYGGVIT |
|