Gene
| Gene Model ID | pfu_aug2.0_39.1_30039 |
|---|---|
| Locus | scaffold39.1 : 77926 ... 90680 : + |
| To GenomeBrowser | scaffold39.1:77926..90680 |
| Genes list of scaffold | scaffold39.1 |
| Synonym | pfu_aug1.0_4962.1_67111 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_39.1_30039.t1 | 1 | 1 | ATP-synt_ab_N | 69 | 135 | 8.0e-20 | 70.8 | 9.5e-23 | 2.8e-19 | 69.0 |
| pfu_aug2.0_39.1_30039.t1 | 2 | 1 | HAS-barrel | 69 | 132 | 1.7e-06 | 27.8 | 2.1e-09 | 6.4e-06 | 25.9 |
| pfu_aug2.0_39.1_30039.t1 | 2 | 2 | HAS-barrel | 127 | 155 | 1.7e-06 | 27.8 | 0.35 | 1100.0 | -0.4 |
| pfu_aug2.0_39.1_30039.t1 | 1 | 1 | ATP-synt_ab | 191 | 415 | 0.0 | 242.1 | 0.0 | 0.0 | 241.5 |
| pfu_aug2.0_39.1_30039.t1 | 1 | 1 | ATP-synt_ab_C | 427 | 517 | 4.0e-25 | 88.4 | 3.4e-28 | 9.9e-25 | 87.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_39.1_30039.t1 | gi|676464658|ref|XP_009056991.1| | hypothetical protein LOTGIDRAFT_206617 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_39.1_30039.t1 | gi|524894502|ref|XP_005103748.1| | PREDICTED: ATP synthase subunit alpha, mitochondrial-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_39.1_30039.t1 | gi|675860786|ref|XP_009015953.1| | hypothetical protein HELRODRAFT_184942 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_39.1_30039.t1 | gi|564233444|ref|XP_006261087.1| | PREDICTED: ATP synthase subunit alpha, mitochondrial [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_39.1_30039.t1 | gi|488599246|ref|XP_004485401.1| | PREDICTED: LOW QUALITY PROTEIN: ATP synthase subunit alpha, mitochondrial [Dasypus novemcinctus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_39.1_30039.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30039.t1 atgctttcggccagattagcagcaagtctcgtaagacagcttcccagggctgcaccaaaggtttgccaacatgccctggg agctggacttatttctgccaaaaagttttccacatctacacatcaccatgctgcaggagctagtgcggaagtgtcatcca tcttggaggagaggattttgggacagacaacacaagctggattagaggaaaccggtcgtgtactatccatcggagacggt attgctcgtgtttatggtctaaagaatattcaggcagaagaaatggtagaattctccagtggtttaaagggtatggcctt gaacttggagagagataacgtaggagttgtcgtatttggtaacgataaattaattaaagaaggagacattgtaaaaagaa caggagctattgtggatgtccccgtaggaaaggaattattaggaagagttgtagatgctttaggaaatcctattgatgga aagggaccaatcacatcacctgacagacagagggtaggagttaaggcccctggtatcatcccccgtatctcagtaaagga acctatgcagaccggtattaaggctgtagatagcttagtacctattggtagaggtcagagagaactcatcattggtgaca ggcagactggcaaaaccgctattgcaattgacacaattattaaccagaagaggttcaacgatggaacaaatgagaaggcc aagctttattgtatctatgttgctattggtcagaagagatccacagtggctcagattgtaaagaggcttactgatgcaga tgccatgaagtacactgtgattgtcagtgctacagcttctgatgctgctcccttacagtatctggctccttactcaggat gtgccatgggagaattcttcagagataacggcatgcacgccctcatcatctacgacgatctgtcaaaacaggctgtagcc taccgtcaaatgtcactgcttctgagacgtccccccggtcgtgaagcctaccctggtgatgtgttctacctccattcacg tttgttggagcgtgctgccaagatgaatgatgataacggtggtggatctctcactgctctccccgtcatcgagacccagg ctggtgatgtgtcagcctacatccccactaacgtcatctctatcacagacggacagatcttcttggagactgagttgttc tacaagggtgtacgtccagcaattaatgtaggattatctgtcagtagggtaggatcagcagcccagacaaaagccatgaa acaggtagcaggctctatgaaattggagttggcccagtacagagaagtggcagctttcgctcagtttggatctgatttgg atcaggctacacagaatttactgaacaggggagttcgtctgaccgagttactcaaacaggctcagtatgtaccaatggcc attgaagaacaagtagcagttatctatgctggtgtcaagggacatttagacaaagttgatccatctagaatcacagaatt tgaagcagcttttgtatcacacatcagaggaagtcagcaagaattattaggtcagatcaggaaagacggtcaaatcacag aagcctccgacgctaaattaaaggaggtagtcacacagttcttggctggattttaa |
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Protein
| Protein ID | pfu_aug2.0_39.1_30039.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30039.t1 MLSARLAASLVRQLPRAAPKVCQHALGAGLISAKKFSTSTHHHAAGASAEVSSILEERILGQTTQAGLEETGRVLSIGDG IARVYGLKNIQAEEMVEFSSGLKGMALNLERDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGKELLGRVVDALGNPIDG KGPITSPDRQRVGVKAPGIIPRISVKEPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTIINQKRFNDGTNEKA KLYCIYVAIGQKRSTVAQIVKRLTDADAMKYTVIVSATASDAAPLQYLAPYSGCAMGEFFRDNGMHALIIYDDLSKQAVA YRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDDNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELF YKGVRPAINVGLSVSRVGSAAQTKAMKQVAGSMKLELAQYREVAAFAQFGSDLDQATQNLLNRGVRLTELLKQAQYVPMA IEEQVAVIYAGVKGHLDKVDPSRITEFEAAFVSHIRGSQQELLGQIRKDGQITEASDAKLKEVVTQFLAGF |
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