Gene
| Gene Model ID | pfu_aug2.0_39.1_30041 |
|---|---|
| Locus | scaffold39.1 : 98252 ... 111195 : - |
| To GenomeBrowser | scaffold39.1:98252..111195 |
| Genes list of scaffold | scaffold39.1 |
| Synonym | pfu_aug1.0_4996.1_01875 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_39.1_30041.t1 | 2 | 1 | KH_1 | 3 | 23 | 2.9e-12 | 46.0 | 0.096 | 470.0 | 0.5 |
| pfu_aug2.0_39.1_30041.t1 | 2 | 1 | KH_3 | 3 | 22 | 1.4e-11 | 43.7 | 0.0053 | 26.0 | 4.5 |
| pfu_aug2.0_39.1_30041.t1 | 2 | 2 | KH_1 | 55 | 111 | 2.9e-12 | 46.0 | 6.6e-15 | 3.3e-11 | 42.6 |
| pfu_aug2.0_39.1_30041.t1 | 2 | 2 | KH_3 | 63 | 104 | 1.4e-11 | 43.7 | 4.5e-13 | 2.2e-09 | 36.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_39.1_30041.t1 | gi|524864482|ref|XP_005089076.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_39.1_30041.t1 | gi|676464651|ref|XP_009056989.1| | hypothetical protein LOTGIDRAFT_121010, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_39.1_30041.t1 | gi|260814700|ref|XP_002602052.1| | hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_39.1_30041.t1 | gi|657572580|ref|XP_008289913.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Stegastes partitus] | 0.0 |
| pfu_aug2.0_39.1_30041.t1 | gi|573876715|ref|XP_006626625.1| | PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Lepisosteus oculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_39.1_30041.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30041.t1 atgatgcagtttaaagccagcgttacagtacccgactctacgagccccgaacgagttctaaccataggagcatcattagg aaatgccctggattgcgtactagacgtcattccgaaattagaagattacaaaaattaccgagatgatgactttgactgtg aaatgagattactagtacatcagagccaggcgggatgtatcattggacgtgcaggattcaaaatcaaagaacttagagag aaaacaggatctcagataaaggtttactcacagtgttgtcctgaatccacagagagggttgtagcaattggtggaaaacc taaagttgttgtggataccattgaaaccatacatgacttactccagactgcaccacctaaaggacccagccagccctatg accctctgtattgggatgagtttatggtaccagaatacggaggttactcagcttcagaaggtgggcgaggtaaaggaggc ccacgtggagctccccctagtggcagaatgggaggaatgggcggcggtatgggtggcatgagaggtggcagaggcggtat gatgggaggccgtggtggcggtggaatgatgggaggtcgcggcggtggaatgagaggcggcggcggtagaagtggtggtg gtggagggggtggtttcggaggtggaaacagatttggaggaggtggtggaggcggcttcggcaatcgtcgaggcggcgga ggacaaggaggaggaatgaggggaggaagttttggagatgattttagtttcaaccgtggacaaggtggaagcggtggtgg atttggcggcggaatgggcagcggtggaggtggaatgggtggaggaatgggaggcggaatgggcggaggaaacatgggag gtggaaatatgggaggaggttttggtagcgacaattttggcggtgacaacttcggaggcggagatggttttgatgatagc tatgataactatggaggcatgcagaattttgcacaggatagcggtagtggtatgggccagatgtttgacggaaactctaa gtcaacccaagttacaatacctaaagatagggggtacagacagggatatggcaactactag |
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Protein
| Protein ID | pfu_aug2.0_39.1_30041.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30041.t1 MMQFKASVTVPDSTSPERVLTIGASLGNALDCVLDVIPKLEDYKNYRDDDFDCEMRLLVHQSQAGCIIGRAGFKIKELRE KTGSQIKVYSQCCPESTERVVAIGGKPKVVVDTIETIHDLLQTAPPKGPSQPYDPLYWDEFMVPEYGGYSASEGGRGKGG PRGAPPSGRMGGMGGGMGGMRGGRGGMMGGRGGGGMMGGRGGGMRGGGGRSGGGGGGGFGGGNRFGGGGGGGFGNRRGGG GQGGGMRGGSFGDDFSFNRGQGGSGGGFGGGMGSGGGGMGGGMGGGMGGGNMGGGNMGGGFGSDNFGGDNFGGGDGFDDS YDNYGGMQNFAQDSGSGMGQMFDGNSKSTQVTIPKDRGYRQGYGNY |
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