Gene
| Gene Model ID | pfu_aug2.0_39.1_30055 |
|---|---|
| Locus | scaffold39.1 : 385415 ... 397443 : + |
| To GenomeBrowser | scaffold39.1:385415..397443 |
| Genes list of scaffold | scaffold39.1 |
| Synonym | pfu_aug1.0_13467.1_39497 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_39.1_30055.t1 | 2 | 1 | Chromo | 323 | 356 | 1.1e-22 | 79.3 | 1.7e-09 | 8.4e-06 | 25.3 |
| pfu_aug2.0_39.1_30055.t1 | 2 | 2 | Chromo | 405 | 461 | 1.1e-22 | 79.3 | 1.5e-18 | 7.4e-15 | 54.3 |
| pfu_aug2.0_39.1_30055.t1 | 1 | 1 | SNF2_N | 504 | 682 | 0.0 | 162.9 | 0.0 | 0.0 | 162.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_39.1_30055.t1 | gi|676472944|ref|XP_009059655.1| | hypothetical protein LOTGIDRAFT_218699 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_39.1_30055.t1 | gi|524894361|ref|XP_005103679.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 2-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_39.1_30055.t1 | gi|700434078|ref|XP_009955965.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Leptosomus discolor] | 0.0 |
| pfu_aug2.0_39.1_30055.t1 | gi|698391035|ref|XP_009805667.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 1-like, partial [Gavia stellata] | 0.0 |
| pfu_aug2.0_39.1_30055.t1 | gi|524894363|ref|XP_005103680.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 2-like isoform X4 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_39.1_30055.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30055.t1 atgccttgttatccaaccgattttgacagtccattatttggtcccattagtaatgagaagagtcccaagtcatcagtaca gaggagagacagacaagatagctctagtaaaggagaacatggtgaaggaagtgtgaagaatgcagcggcttcagaatcag agaattcaagtgggtcaagttcagatgagagtgattcagagtctggctctaaatcagggtcaggttcagattccaattcg gggagttcatcaggagatggctctgataatgaaaaatccaaatcggatagtcactctgatggggacaggaacaaaaagcc gagaattgacgatactgactcacaggacacccaacaaagtacagccaagaggggaaggccacgcaaatctagtatcaatg aaatcaaacagatattacgggagatgtctgatgccccagacctactgggattgaggagatcagggagagcaaaaaaggaa ccagttcgttataacgctttggctgacagtgattctgatgataggccaaaaagaagagggcggaggaaagattcggatga ttggcaaggtagtggaagtgagagtagtgataatagctctagtgatgatttcaaacctgctccccgaattcatgcaaggc aaagaccagttagaacaaaggggagaaaacctttacggggtcgcagacagagacattacactgattcagatgaatctgac agcgatgatccgagacgagtgtcaataaggaacttcacacgacagaaagtaagttataaggaggactctgatgatcgtac tgattcagatgatataatagaggttaactgggaacagacggaggaagatgataacaaagagactatagagaaagtcctag atgatcgcattggaaggaaaatagcaactgggagcaagacgacagtgtacaatgttgaggactctggtgatccaaatgca ggggtggatcgaaaatctgaggaaacggaaaaacaatatctcatcaagtggaagagttgggctcacatacataatacatg ggagtcttacaaaacactgaaggaacaaaaggtccatggtctgaaaaaactggataattacatcaaaaagcaagaagaaa tcaaagaatggaaagattcggctactccagaggatatagactattttgaggtccagcaggaaatggtacaggaactttac caactacacacaaaggtggaaagaatcatctctcactctaaccagaagatggctaatgaggacaatggttatcctgatta cttatgtaaatggcagggtctaccttactccgagtgtacatgggaagagggggagttagtgtccagaaaattccaacctt tggttgatgagtataatgccagaaataagtcacagaggacacccacctcaagtaaatattgtagggcattgaagtataga ccaaagtttgttccatttaaaaaccaacccaagtttataggaggagtggataacttagagctgcgcgattatcagttaga tggaatcaattggctcatgcatgcctggtcgaaggagaactctgccatcctagcagatgaaatgggacttggaaagacca tccagactataggatatctgtctatattgtacaataattaccaagtgtatggaccattcttgatagtggtacctctgtca acagtagcagcatggcagaaagagttcagaaactgggctccggagatgaatgttgttgtgtacttaggagatattcagag cagaaatatgatacgagaaaatgaatggtgccatgctgggaacaaaagacagaaattcaatgttattgtaacgacttacg aaattctgctcaaagataagtcctttcttggtagtgttgcgtgggctgtactaggtgtagatgaagctcatcgtttaaag aattgtgattccttgttatatagaactttgtttgagtttaactctaaccatagactacttattacgggtaccccactaca aaactccttgaaggagctgtgggctttactacatttcattatgcaggaaaagtaa |
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Protein
| Protein ID | pfu_aug2.0_39.1_30055.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30055.t1 MPCYPTDFDSPLFGPISNEKSPKSSVQRRDRQDSSSKGEHGEGSVKNAAASESENSSGSSSDESDSESGSKSGSGSDSNS GSSSGDGSDNEKSKSDSHSDGDRNKKPRIDDTDSQDTQQSTAKRGRPRKSSINEIKQILREMSDAPDLLGLRRSGRAKKE PVRYNALADSDSDDRPKRRGRRKDSDDWQGSGSESSDNSSSDDFKPAPRIHARQRPVRTKGRKPLRGRRQRHYTDSDESD SDDPRRVSIRNFTRQKVSYKEDSDDRTDSDDIIEVNWEQTEEDDNKETIEKVLDDRIGRKIATGSKTTVYNVEDSGDPNA GVDRKSEETEKQYLIKWKSWAHIHNTWESYKTLKEQKVHGLKKLDNYIKKQEEIKEWKDSATPEDIDYFEVQQEMVQELY QLHTKVERIISHSNQKMANEDNGYPDYLCKWQGLPYSECTWEEGELVSRKFQPLVDEYNARNKSQRTPTSSKYCRALKYR PKFVPFKNQPKFIGGVDNLELRDYQLDGINWLMHAWSKENSAILADEMGLGKTIQTIGYLSILYNNYQVYGPFLIVVPLS TVAAWQKEFRNWAPEMNVVVYLGDIQSRNMIRENEWCHAGNKRQKFNVIVTTYEILLKDKSFLGSVAWAVLGVDEAHRLK NCDSLLYRTLFEFNSNHRLLITGTPLQNSLKELWALLHFIMQEK |
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