Gene
| Gene Model ID | pfu_aug2.0_39.1_30056 |
|---|---|
| Locus | scaffold39.1 : 402315 ... 411499 : + |
| To GenomeBrowser | scaffold39.1:402315..411499 |
| Genes list of scaffold | scaffold39.1 |
| Synonym | pfu_aug1.0_125147.1_21111 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_39.1_30056.t1 | 3 | 1 | DUF4208 | 59 | 101 | 1.4e-29 | 102.2 | 0.13 | 980.0 | 0.0 |
| pfu_aug2.0_39.1_30056.t1 | 3 | 2 | DUF4208 | 169 | 186 | 1.4e-29 | 102.2 | 0.7 | 5200.0 | -2.3 |
| pfu_aug2.0_39.1_30056.t1 | 3 | 3 | DUF4208 | 225 | 317 | 1.4e-29 | 102.2 | 1.9e-33 | 1.4e-29 | 102.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_39.1_30056.t1 | gi|657749435|ref|XP_008310090.1| | PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 2 [Cynoglossus semilaevis] | 0.0 |
| pfu_aug2.0_39.1_30056.t1 | gi|551493396|ref|XP_005798266.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_39.1_30056.t1 | gi|658855866|ref|XP_008410582.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform X1 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_39.1_30056.t1 | gi|658855868|ref|XP_008410583.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform X2 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_39.1_30056.t1 | gi|617444857|ref|XP_007566475.1| | PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform X2 [Poecilia formosa] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_39.1_30056.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30056.t1 atgttggaagcaaaaacaaagcacgaggaagaaagcagtcaggatggtgtgccaggaagtggagggaagaagtctcaacg tggtccggcatttaaaatctccagtgtatcggtcaatgctcaatccatcatgaaggctgaacaagaactggagcccctgg cagccactatgccccaggatagggaggggctcagaaatgtattaattactgtttcttctgttgttaaaattttaccagat ggtggagaccataaacctcaagccaaacatttacagaccagagctgactacctccttaaggtgctgaagaaaaacctagg tcctgacaaacaggaaaatatggtaggaagtactattggtacatcaaaaccaaggaaaaaacgaaaaccaaaatcaaaag cagagattattgagaaagatatttctgactcagactctagtgctaatattaaaagtgctgtgaaagaagaatcaacccag gatggtcatactgaacacaccaaaaagaagaagaagaaggatgttggacaccatatagaaggagatgaaaatcataaagg aggcaaagttaacaaaaagaaaaaggggtccaagaagcgagctgcagatggggctatgcacttcacagcaggagcaggac ctgtccctgtggcttcagaaatagactttgacggagaactaccaaaggaggtttttgtgaagtgtaaagagatgatgaga ccagtcaagagagctttaaaacgtttagataacccagaggagggccttacagagaaggagcagctaattcacactcgtca gtgcctattgaagattggtgatcgtatcaacgagtgtatggctaactacaatgatccagagatcatcaagatgtggagaa actatttgtggatttttgtctccaaattcacggaatttgatgccaagaagcttcacaaattatacaagaaaacccacaga aagagggaggaggaacatgataatgaggcaccttcacgacagggtcatgatcgtcatatgccacatggtcatgacaaaca gacagacagcaagaagcataaacgtccgtccatggagcgcggtgagggagacgcttacactggaaataaacggcaccaca atcaggatcattggtccacacataaaaatccaacaacaacacatagcaatggccctcgtcaaggagctagtgtaactcaa actcacaaagcgagtttagtagagtctagtcaggagtccaattcaaatgatcgctggactcatgcaagtccacttgcgag ggcaggtgaacaacctagaaataggtatgagaacaaccagagttcctacaatagaccacaacattatactgatagaagtt accatggtaacgaccctagatttacagattctcatcacaggttcaataatgaccggtataactccgggtcttcatttcat cgtgatcatcctcctaactttcatccacaacattatgatcatcatggcaactttcgagcagatcatcgtggtgaccgatc tagccgaacagattacggtcagtttggtcaccgagaatatggcagcagtagagacattagctattcctcacatcctgaaa ggaaaaggaaaggtgatgtcaatccagatagacgatctcacaaagaccctcgcttattggacgaaaatagtcggttctcc acgtcaagtcaggacggtttctccaaacattga |
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Protein
| Protein ID | pfu_aug2.0_39.1_30056.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30056.t1 MLEAKTKHEEESSQDGVPGSGGKKSQRGPAFKISSVSVNAQSIMKAEQELEPLAATMPQDREGLRNVLITVSSVVKILPD GGDHKPQAKHLQTRADYLLKVLKKNLGPDKQENMVGSTIGTSKPRKKRKPKSKAEIIEKDISDSDSSANIKSAVKEESTQ DGHTEHTKKKKKKDVGHHIEGDENHKGGKVNKKKKGSKKRAADGAMHFTAGAGPVPVASEIDFDGELPKEVFVKCKEMMR PVKRALKRLDNPEEGLTEKEQLIHTRQCLLKIGDRINECMANYNDPEIIKMWRNYLWIFVSKFTEFDAKKLHKLYKKTHR KREEEHDNEAPSRQGHDRHMPHGHDKQTDSKKHKRPSMERGEGDAYTGNKRHHNQDHWSTHKNPTTTHSNGPRQGASVTQ THKASLVESSQESNSNDRWTHASPLARAGEQPRNRYENNQSSYNRPQHYTDRSYHGNDPRFTDSHHRFNNDRYNSGSSFH RDHPPNFHPQHYDHHGNFRADHRGDRSSRTDYGQFGHREYGSSRDISYSSHPERKRKGDVNPDRRSHKDPRLLDENSRFS TSSQDGFSKH |
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