Gene
| Gene Model ID | pfu_aug2.0_39.1_30059 |
|---|---|
| Locus | scaffold39.1 : 454775 ... 464850 : + |
| To GenomeBrowser | scaffold39.1:454775..464850 |
| Genes list of scaffold | scaffold39.1 |
| Synonym | pfu_aug1.0_2625.1_30185 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_39.1_30059.t1 | 1 | 1 | RIO1 | 78 | 233 | 0.0 | 158.3 | 0.0 | 0.0 | 157.6 |
| pfu_aug2.0_39.1_30059.t1 | 2 | 1 | Kdo | 83 | 138 | 3.3e-09 | 36.1 | 9.4e-09 | 2.8e-05 | 23.2 |
| pfu_aug2.0_39.1_30059.t1 | 2 | 1 | APH | 111 | 150 | 1.3e-08 | 34.9 | 8.4e-05 | 0.25 | 11.0 |
| pfu_aug2.0_39.1_30059.t1 | 2 | 2 | Kdo | 169 | 214 | 3.3e-09 | 36.1 | 4.4e-05 | 0.13 | 11.2 |
| pfu_aug2.0_39.1_30059.t1 | 2 | 2 | APH | 177 | 214 | 1.3e-08 | 34.9 | 1.3e-08 | 4.0e-05 | 23.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_39.1_30059.t1 | gi|533134736|ref|XP_005382275.1| | PREDICTED: serine/threonine-protein kinase RIO2 isoform X2 [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_39.1_30059.t1 | gi|533134738|ref|XP_005382276.1| | PREDICTED: serine/threonine-protein kinase RIO2 isoform X3 [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_39.1_30059.t1 | gi|511900969|ref|XP_004770012.1| | 0.0 | |
| pfu_aug2.0_39.1_30059.t1 | gi|533134734|ref|XP_005382274.1| | PREDICTED: serine/threonine-protein kinase RIO2 isoform X1 [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_39.1_30059.t1 | gi|86826381|gb|AAI12495.1| | RIO kinase 2 (yeast) [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_39.1_30059.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30059.t1 atgttgaaagtttcaattggggaagatgggcaaattaaacgtctcagtgttacgatacctgtcaaaggaggatttcaggg ttttaacagctgtaaggatactaagattaagaagatactgaactacaatatgggtattctcattaatgttttggagtccg attcccctcaaattgattctccaacaaatatagctatgctcaagcaaggagcgcgtaactcttccaaccccattcttaag ctaggtagaacatcattcaggcagttaaagaacaaaagggactaccacaaacacagaaagaatgcatcttggttatacct gtcacgtttagctgcgatgaaggaatttgcttatatgaaggcactgtatgacagaaagtttccggtacctaagccagtgg actttaatcggcacgctgtggttatggaattgctcagcggtcatacattttgtaacgtgaaggagatagggaatccgtct ctggcgtatgatgactgtatgaacctgatactaaggctcgctaactgtggggttatacatggtgactttaatgaatttaa ccttatgatagacgatgatggccacgttaccatgatagattttcctcagatggtatccacctcacatcccaatgctgaat ggtatttcaacagagatgtcaactgcataagagaattttttgcaagacggtttcactatgagagtgaactttatccaaag ttctcagatgtaagtcgtgatgatgatctagatgttgaggtatcagctagtggctttaccaaagagatggcagaatcatt tgacgaggcagcagatgaattcaacatcaggggaggacctgactgtgagaagtcgcatgattcaaatgaccaatcaaatt ctgaggaagaggaggagctaccagatcatccaacagaaacaaaggatccgattggtgaacccacgaatgaggtcacctct gacattgaagaatcgaaatttgaagatgcagtgaaaattgaagatagtgagagagatgaaacacagagatctgttagact ttgtgaggaacaaacagaacttgcagaaaaagtgaatgacagctgtgattcagaggagaagagatag |
|
Protein
| Protein ID | pfu_aug2.0_39.1_30059.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_39.1_30059.t1 MLKVSIGEDGQIKRLSVTIPVKGGFQGFNSCKDTKIKKILNYNMGILINVLESDSPQIDSPTNIAMLKQGARNSSNPILK LGRTSFRQLKNKRDYHKHRKNASWLYLSRLAAMKEFAYMKALYDRKFPVPKPVDFNRHAVVMELLSGHTFCNVKEIGNPS LAYDDCMNLILRLANCGVIHGDFNEFNLMIDDDGHVTMIDFPQMVSTSHPNAEWYFNRDVNCIREFFARRFHYESELYPK FSDVSRDDDLDVEVSASGFTKEMAESFDEAADEFNIRGGPDCEKSHDSNDQSNSEEEEELPDHPTETKDPIGEPTNEVTS DIEESKFEDAVKIEDSERDETQRSVRLCEEQTELAEKVNDSCDSEEKR |
|