Gene
| Gene Model ID | pfu_aug2.0_390.1_00684 |
|---|---|
| Locus | scaffold390.1 : 51636 ... 60251 : + |
| To GenomeBrowser | scaffold390.1:51636..60251 |
| Genes list of scaffold | scaffold390.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neurogenic locus notch protein homolog | GO:0007275 GO:0009987 GO:0048856 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_390.1_00684.t1 | 1 | 1 | Jacalin | 36 | 149 | 9.5e-08 | 31.9 | 7.9e-11 | 1.5e-07 | 31.3 |
| pfu_aug2.0_390.1_00684.t1 | 3 | 1 | EGF | 154 | 184 | 7.4e-13 | 48.1 | 3.8e-10 | 7.0e-07 | 29.0 |
| pfu_aug2.0_390.1_00684.t1 | 3 | 2 | EGF | 192 | 222 | 7.4e-13 | 48.1 | 3.0e-11 | 5.5e-08 | 32.6 |
| pfu_aug2.0_390.1_00684.t1 | 3 | 3 | EGF | 229 | 235 | 7.4e-13 | 48.1 | 8.0 | 15000.0 | -6.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_390.1_00684.t1 | gi|620960304|ref|XP_007664966.1| | PREDICTED: neurogenic locus notch homolog protein 2 [Ornithorhynchus anatinus] | 3.0e-18 |
| pfu_aug2.0_390.1_00684.t1 | gi|573905763|ref|XP_006640602.1| | PREDICTED: neurogenic locus notch protein homolog [Lepisosteus oculatus] | 3.0e-17 |
| pfu_aug2.0_390.1_00684.t1 | gi|585689665|ref|XP_006820916.1| | PREDICTED: SCO-spondin-like [Saccoglossus kowalevskii] | 2.0e-16 |
| pfu_aug2.0_390.1_00684.t1 | gi|657814705|ref|XP_008334545.1| | PREDICTED: LOW QUALITY PROTEIN: neurogenic locus notch homolog protein 1-like [Cynoglossus semilaevis] | 5.0e-16 |
| pfu_aug2.0_390.1_00684.t1 | gi|734615107|ref|XP_010735131.1| | PREDICTED: neurogenic locus notch homolog protein 1-like [Larimichthys crocea] | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_390.1_00684.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_390.1_00684.t1 atgattgatattattgtttttgtagaaacgattaaagcattcacccaactttcgatcggaggaaatggaggggttgtttt tgacgatatgtcatcatggtcagtcacatatggtccaatacggcaagtcacaatgcaatgttaccaccaatatgttggat ccattcaaataaactacggtggtataaacggatcaaggaatggtaatgctgggagggatgggacgatggcggtagtgcaa gtggacctagatcagggggaatcaatagagggtgtggatgcttggggagattctatcgtgaatggaattcagttcattac aagtactggttataaagatttatgtggatacaaaaatggaaatttcatatcggtgagaaatcgagagcttgcttatatat ctggaagagctggaaatataatcgacaaaattacattttattggagagatatcgtcaaatgccaggagaacacttgctta aacaatggtacatgcttgaatacgatacaaggatacttctgtggctgtgctccaggtttcaacggccaaaactgtgaaaa ggatgccgagatatgccagcagaacacttgcttaaacaatggtacatgtttggaaacggcacaaggattcttctgtagct gtgctccgggtttcaatggtaaaaactgtgaaaacgaagaaccatgcgattcaaatcatccttgttgtgaacttgaatcg tcttatacttcaaatatgacttacctagaacttaaagaaaagttagaaagcctgaggaaagaaaacctgattgccaagaa ctcaacagcgatgtttaaaagatcaaaaatttctgctaaagattaccgcatttcttcaacaataactggaagcgtacttg gtgtgtttacaatctctattcttctgttggtgatgcttttctctgattttccattattgatcagacacatgatatcaggg acgtcttag |
|
Protein
| Protein ID | pfu_aug2.0_390.1_00684.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_390.1_00684.t1 MIDIIVFVETIKAFTQLSIGGNGGVVFDDMSSWSVTYGPIRQVTMQCYHQYVGSIQINYGGINGSRNGNAGRDGTMAVVQ VDLDQGESIEGVDAWGDSIVNGIQFITSTGYKDLCGYKNGNFISVRNRELAYISGRAGNIIDKITFYWRDIVKCQENTCL NNGTCLNTIQGYFCGCAPGFNGQNCEKDAEICQQNTCLNNGTCLETAQGFFCSCAPGFNGKNCENEEPCDSNHPCCELES SYTSNMTYLELKEKLESLRKENLIAKNSTAMFKRSKISAKDYRISSTITGSVLGVFTISILLLVMLFSDFPLLIRHMISG TS |
|