Gene
| Gene Model ID | pfu_aug2.0_390.1_00685 |
|---|---|
| Locus | scaffold390.1 : 134602 ... 222392 : - |
| To GenomeBrowser | scaffold390.1:134602..222392 |
| Genes list of scaffold | scaffold390.1 |
| Synonym | pfu_aug1.0_9640.1_31791 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| eukaryotic translation initiation factor 3 subunit m | GO:0006413 GO:0070993 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_390.1_00685.t1 | 1 | 1 | PCI | 526 | 624 | 3.4e-12 | 46.5 | 6.8e-16 | 1.0e-11 | 45.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_390.1_00685.t1 | gi|524911302|ref|XP_005110516.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit M-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_390.1_00685.t1 | gi|676433038|ref|XP_009046769.1| | hypothetical protein LOTGIDRAFT_138250 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_390.1_00685.t1 | gi|676442732|ref|XP_009049896.1| | hypothetical protein LOTGIDRAFT_158494 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_390.1_00685.t1 | gi|742084470|ref|XP_010874653.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit M [Esox lucius] | 0.0 |
| pfu_aug2.0_390.1_00685.t1 | gi|432852499|ref|XP_004067278.1| | PREDICTED: eukaryotic translation initiation factor 3 subunit M [Oryzias latipes] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_390.1_00685.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_390.1_00685.t1 atgtcccaatattatcacggtttcctgtaccgttatcataatgacaccaagttgattccaatctatgattcgaatggctg gttggcagggattcaggcaattattccagcaaacatgaaggggttcaacagtaagaacgagtctatacaattacccccta tagagacgatgcctccggtaatacctatgtttacaaacgctggtagtccttattttacgatcacagcatactttaagcat ccaaaacttgtatgcaatcctattgctaaagtacaagcagggaaggggctatacatacaaactgggaaagatcctgtaat taaccataaacagattccaatggaggccaaagacttggacgataactggaaacgagcggattgtctgccatcaatgggta cacactacttttacaatctgaccaagaatttggcgtgtgaacaaatttatccagtctttctgatgtacgacaacgaggga catttaggggcatttggttggacattccagggtgaacctttggatggtgatatttcagtggttgattggttcaaacttac aaaagaaacattttattttgcctttgatccaacacagcttccatcgtgcatgtttactgacggatttcaaatttttggcc ttcacatatggctccaaccacataatcaatcaaccatgatgatatgtcccaccaaaaccataaccaagaaaccgacagta gtcgacacatcaaccagaatatacaatcctatggtggaaaatggcgatccagaaatgaagggtcagagtaaccaaaataa taacattataaatgccgatcctggtgatagtgcgagtacgaataaaggcaatgccagtaaagcatttcctagctacagca cgttctattctatcagcaaaagaaatctaccaaatcctagcatgagtggaattccagtatttatcgatttacccatacca gaacaggctctggagttgaggagtttcctgaagtccctagaggctgatatctctgcagagcccgcggaaactgggatcct tacagacctacggcacatcatagaagctagcaatgcatgctggtcctctaaagaagtcggcgatgtcgaccttgaaatgg ttttcaacagtatcatctccctcattctgggagataaaagggccgctacaagactcaaactactgtctaacctattttat ggcctggatgagaagtccccactcagggcagatctgtacgtgtcaatggtaaaactagcccagcaatcggacctcgtccc tcaacttcaactcaacttagaccagataaagaagtggatttcccagtgggacattagtacagtcaaactccagaatcttc tcagatctatacatgatgctcttatagactctaatatgagtgaaatggctaccaaggttatgattgatctacttggaacg tatacagaagataatgcttcacaggctaagaatgatgcccacagatgcatagtcacacatctaggtgaccctaacacatt cttaatggaccatctcctggcactgaagcccgtcaaattcctggaaggggagctcatccatgatctcttgacgatatttg tatccgggaaaatagcagattaccaacagttttacaaaaacaacactgactttgttacctctcttggtctctcccatgat cagaatctccgtaagatgaggttcctcaccttcatacagatggctgaaaaccggaaagaaatcgactacagcattatcga aaaggaaatgcagcttgaagaagatgatatagaggacttcatcattgatgttctaagaaccaaatctgtgaaagctaaaa tagatcagatgcagaggaaaattatcatccactcgacgatccatcgtacgtacggacgtcaacagtggcagcttctacat cagcagctcgtacagtggcgggaaaggctggcacaagtacagacgggactccagcagctagatattatacaaaaccaggc aacaacacaagcttag |
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Protein
| Protein ID | pfu_aug2.0_390.1_00685.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_390.1_00685.t1 MSQYYHGFLYRYHNDTKLIPIYDSNGWLAGIQAIIPANMKGFNSKNESIQLPPIETMPPVIPMFTNAGSPYFTITAYFKH PKLVCNPIAKVQAGKGLYIQTGKDPVINHKQIPMEAKDLDDNWKRADCLPSMGTHYFYNLTKNLACEQIYPVFLMYDNEG HLGAFGWTFQGEPLDGDISVVDWFKLTKETFYFAFDPTQLPSCMFTDGFQIFGLHIWLQPHNQSTMMICPTKTITKKPTV VDTSTRIYNPMVENGDPEMKGQSNQNNNIINADPGDSASTNKGNASKAFPSYSTFYSISKRNLPNPSMSGIPVFIDLPIP EQALELRSFLKSLEADISAEPAETGILTDLRHIIEASNACWSSKEVGDVDLEMVFNSIISLILGDKRAATRLKLLSNLFY GLDEKSPLRADLYVSMVKLAQQSDLVPQLQLNLDQIKKWISQWDISTVKLQNLLRSIHDALIDSNMSEMATKVMIDLLGT YTEDNASQAKNDAHRCIVTHLGDPNTFLMDHLLALKPVKFLEGELIHDLLTIFVSGKIADYQQFYKNNTDFVTSLGLSHD QNLRKMRFLTFIQMAENRKEIDYSIIEKEMQLEEDDIEDFIIDVLRTKSVKAKIDQMQRKIIIHSTIHRTYGRQQWQLLH QQLVQWRERLAQVQTGLQQLDIIQNQATTQA |
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