Gene
| Gene Model ID | pfu_aug2.0_390.1_00688 |
|---|---|
| Locus | scaffold390.1 : 288983 ... 313166 : - |
| To GenomeBrowser | scaffold390.1:288983..313166 |
| Genes list of scaffold | scaffold390.1 |
| Synonym | pfu_aug1.0_8229.1_24357 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_390.1_00688.t1 | 2 | 1 | Fibrinogen_C | 247 | 435 | 0.0 | 215.0 | 0.0 | 0.0 | 177.3 |
| pfu_aug2.0_390.1_00688.t1 | 2 | 2 | Fibrinogen_C | 431 | 491 | 0.0 | 215.0 | 2.9e-15 | 1.1e-11 | 44.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_390.1_00688.t1 | gi|260797355|ref|XP_002593668.1| | hypothetical protein BRAFLDRAFT_252156 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_390.1_00688.t1 | gi|260797347|ref|XP_002593664.1| | hypothetical protein BRAFLDRAFT_252175 [Branchiostoma floridae] | 1.4013e-45 |
| pfu_aug2.0_390.1_00688.t1 | gi|340383203|ref|XP_003390107.1| | PREDICTED: ryncolin-4-like [Amphimedon queenslandica] | 2.94273e-44 |
| pfu_aug2.0_390.1_00688.t1 | gi|260797367|ref|XP_002593674.1| | hypothetical protein BRAFLDRAFT_108089 [Branchiostoma floridae] | 5.99756e-43 |
Transcript
| Transcript ID | pfu_aug2.0_390.1_00688.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_390.1_00688.t1 atggttaacagttgttacttcgacaacaatgcaacactggaaacgcgggaaaaacgatatttggcgggaaaaaccatcgt ttcaaatgaaatcataggatctcagatgtgtgtaaaggaatgtctcagaagaaattgtaaatcgataaactttaataaag atctacttcagtgtacactgaattcgaatgatgacgatagtccacaagaggggtcctcattacacgaagattctgatttc accttcattaatgttactcgttggtcaccaaatgagttagaagaaatagcatcacaatctccagatatcaacgttacaca agataactatgtttgtgtaacattgaagtcgaagaagatcgcttgtgttaaagatgggaaaagatacttagtttctgact tcaacttcacttacagatacatagacgaagtgttgttcatcaataatccaaaattcgcggattacctcagcagtatctat ccttcggagcttgaggtcaaagaaactacagagacaaataatccagcttcctatttggacataatgttgtccatcgacac tgatggtcacatgaacatctcactctatgacaaacgtgacgacttcaatttcagcattacaaattttcctttcctgagta gctacattccttcatcgcctgcttatgacgtgttcatatctcagttgatacgctatgccagaacaagtaccaaatatacg gattatcgttctgagagaccacgtgattgtggggatatttatacccgtggaggaagaaatagtggagtcttcatcctgta ccctacagatggcagtgataattttacaaaggcatactgtgacatagacaacaccggagggtggaccgtatttcaaagga gacaaaatgggcaaactgattttaaaagatcttggaatgaatacagagatagatttggtgacccagcagacgagtactgg ctaggtaacctgtacttgcatcaactcactcaaggcaggagctgtcaattaagggtagaattcatacgccggaacgataa tacgggatacgcaaattacacagtttttgaggtggcaaatgaagacgaaaaattcaagttgaagataagcggttactcag gagatcaaggagatggtatgtccacggctaacggcattggctttacaacttatgacgccgacaatgacatccaaccgaat gtcaactgtgctgtagcccactcaggtgcgtggtggcactctgattgcgggaacaccaatctgaatggagattactcttt tgatgatggatatggagatggtatgtccacggctaacggcattggctttacaacttatgacgccgacaatgacatccaac cgaatgtcaactgtgctgtagcccactcaggtgcgtggtggcactctgattgcgggaacaccaatctgaatggagattac tcttttgatgatggatatgttcaacaactcaataaaaccacaccaacagttcaacaactcaatataacgacaccaacagt tcaacaactcaatataaccacagcaatagtccaacaactcaatataacgacaccaacagttcaacaactcaatataacca caccaacagtccaacaactcaatataaccataccaacagatcaacaactcaatataacgacaccaacagttcaacaactc aatataaccacaacaacagttcaacaactcaatataacgacaccaacagttcaacaactcaatataaccacaccaacagt ccaacaactcaatataacgacaccaacagttcaacaactcaatataaccacagcaacagtccgacaacacaacaacccaa tataa |
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Protein
| Protein ID | pfu_aug2.0_390.1_00688.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_390.1_00688.t1 MVNSCYFDNNATLETREKRYLAGKTIVSNEIIGSQMCVKECLRRNCKSINFNKDLLQCTLNSNDDDSPQEGSSLHEDSDF TFINVTRWSPNELEEIASQSPDINVTQDNYVCVTLKSKKIACVKDGKRYLVSDFNFTYRYIDEVLFINNPKFADYLSSIY PSELEVKETTETNNPASYLDIMLSIDTDGHMNISLYDKRDDFNFSITNFPFLSSYIPSSPAYDVFISQLIRYARTSTKYT DYRSERPRDCGDIYTRGGRNSGVFILYPTDGSDNFTKAYCDIDNTGGWTVFQRRQNGQTDFKRSWNEYRDRFGDPADEYW LGNLYLHQLTQGRSCQLRVEFIRRNDNTGYANYTVFEVANEDEKFKLKISGYSGDQGDGMSTANGIGFTTYDADNDIQPN VNCAVAHSGAWWHSDCGNTNLNGDYSFDDGYGDGMSTANGIGFTTYDADNDIQPNVNCAVAHSGAWWHSDCGNTNLNGDY SFDDGYVQQLNKTTPTVQQLNITTPTVQQLNITTAIVQQLNITTPTVQQLNITTPTVQQLNITIPTDQQLNITTPTVQQL NITTTTVQQLNITTPTVQQLNITTPTVQQLNITTPTVQQLNITTATVRQHNNPI |
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