Gene
| Gene Model ID | pfu_aug2.0_392.1_07442 |
|---|---|
| Locus | scaffold392.1 : 2713 ... 7375 : - |
| To GenomeBrowser | scaffold392.1:2713..7375 |
| Genes list of scaffold | scaffold392.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trafficking protein particle complex subunit 1 | GO:0005801 GO:0006888 GO:0030008 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_392.1_07442.t1 | 1 | 1 | Sybindin | 1 | 98 | 1.3e-31 | 109.2 | 1.9e-35 | 1.4e-31 | 109.1 |
| pfu_aug2.0_392.1_07442.t1 | 1 | 1 | Sedlin_N | 29 | 97 | 6.1e-07 | 29.3 | 1.0e-10 | 7.4e-07 | 29.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_392.1_07442.t1 | gi|524899972|ref|XP_005106411.1| | PREDICTED: trafficking protein particle complex subunit 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_392.1_07442.t1 | gi|260789341|ref|XP_002589705.1| | hypothetical protein BRAFLDRAFT_239479 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_392.1_07442.t1 | gi|676430751|ref|XP_009046029.1| | hypothetical protein LOTGIDRAFT_137721 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_392.1_07442.t1 | gi|149438415|ref|XP_001508283.1| | PREDICTED: trafficking protein particle complex subunit 1 [Ornithorhynchus anatinus] | 0.0 |
| pfu_aug2.0_392.1_07442.t1 | gi|327283965|ref|XP_003226710.1| | PREDICTED: trafficking protein particle complex subunit 1 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_392.1_07442.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_392.1_07442.t1 atgtatggaatgatatactccattaagtcatttgtaaacagaatttcacccacagatttgaaagatggatttttgaattt taagaccaacagatacaagctgaacttttatgagacagcaagtggtatgaagtttatcatgacgacagatctcactgtgg gaaatatacgagatgtcttacatcagatttatagtaatatttatttggagtatgtggtgagaaatccgttatgtgaatta ggccagccaatttccagtgaactttttcataccaagctggatgaatatgttagaggacttcctatttttcctacaagaat ttcatga |
|
Protein
| Protein ID | pfu_aug2.0_392.1_07442.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_392.1_07442.t1 MYGMIYSIKSFVNRISPTDLKDGFLNFKTNRYKLNFYETASGMKFIMTTDLTVGNIRDVLHQIYSNIYLEYVVRNPLCEL GQPISSELFHTKLDEYVRGLPIFPTRIS |
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