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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_392.1_07444
Locus scaffold392.1 : 32038 ... 41035 : -
To GenomeBrowser scaffold392.1:32038..41035
Genes list of scaffold scaffold392.1
Synonym pfu_aug1.0_39550.1_26892

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_392.1_07444.t1 29 1 LRR_1 72 86 0.0 163.3 0.77 1400.0 0.0
pfu_aug2.0_392.1_07444.t1 22 1 LRR_4 74 104 0.0 236.7 3.1e-05 0.058 13.0
pfu_aug2.0_392.1_07444.t1 12 1 LRR_8 74 124 0.0 217.2 1.1e-09 2.0e-06 27.4
pfu_aug2.0_392.1_07444.t1 27 1 LRR_7 74 82 1.6e-20 69.5 1.8 3400.0 -0.8
pfu_aug2.0_392.1_07444.t1 8 1 LRR_9 87 164 6.2e-09 35.6 0.0012 2.3 7.7
pfu_aug2.0_392.1_07444.t1 22 2 LRR_4 89 129 0.0 236.7 2.9e-11 5.3e-08 32.3
pfu_aug2.0_392.1_07444.t1 24 1 LRR_6 89 102 9.6e-21 71.4 1.3 2400.0 -0.8
pfu_aug2.0_392.1_07444.t1 29 2 LRR_1 90 110 0.0 163.3 0.0095 18.0 5.8
pfu_aug2.0_392.1_07444.t1 27 2 LRR_7 90 105 1.6e-20 69.5 0.77 1400.0 0.3
pfu_aug2.0_392.1_07444.t1 24 2 LRR_6 111 125 9.6e-21 71.4 0.024 45.0 4.5
pfu_aug2.0_392.1_07444.t1 29 3 LRR_1 113 130 0.0 163.3 0.0024 4.5 7.6
pfu_aug2.0_392.1_07444.t1 27 3 LRR_7 113 128 1.6e-20 69.5 0.074 140.0 3.4
pfu_aug2.0_392.1_07444.t1 12 2 LRR_8 138 173 0.0 217.2 0.00074 1.4 8.7
pfu_aug2.0_392.1_07444.t1 29 4 LRR_1 138 155 0.0 163.3 0.065 120.0 3.3
pfu_aug2.0_392.1_07444.t1 27 4 LRR_7 139 151 1.6e-20 69.5 0.35 650.0 1.3
pfu_aug2.0_392.1_07444.t1 22 3 LRR_4 140 173 0.0 236.7 0.00038 0.7 9.5
pfu_aug2.0_392.1_07444.t1 24 3 LRR_6 157 170 9.6e-21 71.4 0.039 71.0 3.9
pfu_aug2.0_392.1_07444.t1 29 5 LRR_1 158 172 0.0 163.3 0.036 66.0 4.1
pfu_aug2.0_392.1_07444.t1 27 5 LRR_7 159 171 1.6e-20 69.5 0.29 540.0 1.6
pfu_aug2.0_392.1_07444.t1 12 3 LRR_8 182 236 0.0 217.2 5.4e-11 1.0e-07 31.6
pfu_aug2.0_392.1_07444.t1 29 6 LRR_1 182 196 0.0 163.3 0.012 22.0 5.5
pfu_aug2.0_392.1_07444.t1 8 2 LRR_9 182 259 6.2e-09 35.6 0.024 44.0 3.5
pfu_aug2.0_392.1_07444.t1 22 4 LRR_4 183 195 0.0 236.7 0.0095 18.0 5.1
pfu_aug2.0_392.1_07444.t1 24 4 LRR_6 183 191 9.6e-21 71.4 0.55 1000.0 0.3
pfu_aug2.0_392.1_07444.t1 27 6 LRR_7 184 194 1.6e-20 69.5 0.91 1700.0 0.1
pfu_aug2.0_392.1_07444.t1 22 5 LRR_4 201 241 0.0 236.7 6.4e-09 1.2e-05 24.8
pfu_aug2.0_392.1_07444.t1 24 5 LRR_6 201 214 9.6e-21 71.4 0.031 57.0 4.2
pfu_aug2.0_392.1_07444.t1 27 7 LRR_7 201 215 1.6e-20 69.5 0.14 260.0 2.6
pfu_aug2.0_392.1_07444.t1 29 7 LRR_1 202 223 0.0 163.3 0.0062 12.0 6.4
pfu_aug2.0_392.1_07444.t1 24 6 LRR_6 223 236 9.6e-21 71.4 0.017 31.0 5.0
pfu_aug2.0_392.1_07444.t1 27 8 LRR_7 224 240 1.6e-20 69.5 0.017 32.0 5.3
pfu_aug2.0_392.1_07444.t1 29 8 LRR_1 225 242 0.0 163.3 0.0012 2.2 8.6
pfu_aug2.0_392.1_07444.t1 12 4 LRR_8 247 283 0.0 217.2 8.0e-06 0.015 15.0
pfu_aug2.0_392.1_07444.t1 24 7 LRR_6 247 260 9.6e-21 71.4 0.017 32.0 5.0
pfu_aug2.0_392.1_07444.t1 22 6 LRR_4 249 284 0.0 236.7 6.3e-07 0.0012 18.4
pfu_aug2.0_392.1_07444.t1 29 9 LRR_1 249 269 0.0 163.3 6.8e-05 0.13 12.4
pfu_aug2.0_392.1_07444.t1 27 9 LRR_7 249 263 1.6e-20 69.5 0.0058 11.0 6.7
pfu_aug2.0_392.1_07444.t1 8 3 LRR_9 267 345 6.2e-09 35.6 1.6e-05 0.03 13.8
pfu_aug2.0_392.1_07444.t1 29 10 LRR_1 275 293 0.0 163.3 0.19 360.0 1.8
pfu_aug2.0_392.1_07444.t1 22 7 LRR_4 277 310 0.0 236.7 4.4e-07 0.00081 18.9
pfu_aug2.0_392.1_07444.t1 12 5 LRR_8 291 329 0.0 217.2 2.4e-05 0.044 13.5
pfu_aug2.0_392.1_07444.t1 24 8 LRR_6 293 306 9.6e-21 71.4 0.045 84.0 3.7
pfu_aug2.0_392.1_07444.t1 22 8 LRR_4 295 333 0.0 236.7 4.1e-08 7.5e-05 22.2
pfu_aug2.0_392.1_07444.t1 29 11 LRR_1 295 315 0.0 163.3 0.00029 0.54 10.4
pfu_aug2.0_392.1_07444.t1 27 10 LRR_7 295 310 1.6e-20 69.5 0.015 28.0 5.5
pfu_aug2.0_392.1_07444.t1 24 9 LRR_6 316 330 9.6e-21 71.4 0.052 96.0 3.5
pfu_aug2.0_392.1_07444.t1 27 11 LRR_7 317 331 1.6e-20 69.5 0.16 300.0 2.3
pfu_aug2.0_392.1_07444.t1 29 12 LRR_1 319 331 0.0 163.3 0.83 1500.0 -0.1
pfu_aug2.0_392.1_07444.t1 22 9 LRR_4 321 351 0.0 236.7 0.001 1.9 8.2
pfu_aug2.0_392.1_07444.t1 24 10 LRR_6 338 350 9.6e-21 71.4 0.032 59.0 4.1
pfu_aug2.0_392.1_07444.t1 22 10 LRR_4 339 372 0.0 236.7 2.7e-05 0.05 13.2
pfu_aug2.0_392.1_07444.t1 12 6 LRR_8 340 397 0.0 217.2 1.6e-09 2.9e-06 26.9
pfu_aug2.0_392.1_07444.t1 29 13 LRR_1 340 356 0.0 163.3 0.047 87.0 3.7
pfu_aug2.0_392.1_07444.t1 27 12 LRR_7 340 352 1.6e-20 69.5 4.1 7600.0 -1.9
pfu_aug2.0_392.1_07444.t1 24 11 LRR_6 361 375 9.6e-21 71.4 0.0088 16.0 5.9
pfu_aug2.0_392.1_07444.t1 22 11 LRR_4 362 398 0.0 236.7 3.0e-09 5.6e-06 25.8
pfu_aug2.0_392.1_07444.t1 8 4 LRR_9 362 415 6.2e-09 35.6 0.023 43.0 3.5
pfu_aug2.0_392.1_07444.t1 29 14 LRR_1 363 382 0.0 163.3 0.0012 2.2 8.6
pfu_aug2.0_392.1_07444.t1 27 13 LRR_7 363 378 1.6e-20 69.5 0.022 41.0 5.0
pfu_aug2.0_392.1_07444.t1 24 12 LRR_6 385 398 9.6e-21 71.4 0.33 620.0 1.0
pfu_aug2.0_392.1_07444.t1 29 15 LRR_1 386 402 0.0 163.3 0.0051 9.4 6.7
pfu_aug2.0_392.1_07444.t1 27 14 LRR_7 386 401 1.6e-20 69.5 0.027 50.0 4.7
pfu_aug2.0_392.1_07444.t1 8 5 LRR_9 389 478 6.2e-09 35.6 0.006 11.0 5.5
pfu_aug2.0_392.1_07444.t1 22 12 LRR_4 410 446 0.0 236.7 8.5e-12 1.6e-08 33.9
pfu_aug2.0_392.1_07444.t1 12 7 LRR_8 410 466 0.0 217.2 2.1e-10 3.8e-07 29.7
pfu_aug2.0_392.1_07444.t1 29 16 LRR_1 410 430 0.0 163.3 4.8e-05 0.088 12.8
pfu_aug2.0_392.1_07444.t1 24 13 LRR_6 410 421 9.6e-21 71.4 0.0043 7.9 6.8
pfu_aug2.0_392.1_07444.t1 27 15 LRR_7 410 424 1.6e-20 69.5 0.00018 0.33 11.3
pfu_aug2.0_392.1_07444.t1 24 14 LRR_6 430 443 9.6e-21 71.4 0.019 36.0 4.8
pfu_aug2.0_392.1_07444.t1 29 17 LRR_1 432 450 0.0 163.3 0.047 87.0 3.7
pfu_aug2.0_392.1_07444.t1 27 16 LRR_7 432 443 1.6e-20 69.5 0.72 1300.0 0.4
pfu_aug2.0_392.1_07444.t1 29 18 LRR_1 455 468 0.0 163.3 0.89 1600.0 -0.2
pfu_aug2.0_392.1_07444.t1 27 17 LRR_7 455 469 1.6e-20 69.5 1.0 1900.0 0.0
pfu_aug2.0_392.1_07444.t1 22 13 LRR_4 456 486 0.0 236.7 0.0072 13.0 5.4
pfu_aug2.0_392.1_07444.t1 24 15 LRR_6 473 485 9.6e-21 71.4 0.0057 11.0 6.5
pfu_aug2.0_392.1_07444.t1 27 18 LRR_7 474 485 1.6e-20 69.5 0.041 76.0 4.2
pfu_aug2.0_392.1_07444.t1 12 8 LRR_8 475 485 0.0 217.2 0.15 270.0 1.4
pfu_aug2.0_392.1_07444.t1 29 19 LRR_1 475 486 0.0 163.3 0.012 21.0 5.6
pfu_aug2.0_392.1_07444.t1 8 6 LRR_9 492 516 6.2e-09 35.6 0.11 210.0 1.3
pfu_aug2.0_392.1_07444.t1 24 16 LRR_6 505 515 9.6e-21 71.4 1.4 2500.0 -0.9
pfu_aug2.0_392.1_07444.t1 12 9 LRR_8 506 563 0.0 217.2 2.2e-07 0.00041 20.0
pfu_aug2.0_392.1_07444.t1 22 14 LRR_4 507 544 0.0 236.7 8.4e-08 0.00016 21.2
pfu_aug2.0_392.1_07444.t1 29 20 LRR_1 507 527 0.0 163.3 0.92 1700.0 -0.2
pfu_aug2.0_392.1_07444.t1 27 19 LRR_7 507 522 1.6e-20 69.5 1.6 2900.0 -0.6
pfu_aug2.0_392.1_07444.t1 8 7 LRR_9 528 556 6.2e-09 35.6 0.01 19.0 4.7
pfu_aug2.0_392.1_07444.t1 24 17 LRR_6 529 545 9.6e-21 71.4 0.0019 3.6 7.9
pfu_aug2.0_392.1_07444.t1 27 20 LRR_7 530 544 1.6e-20 69.5 0.0065 12.0 6.6
pfu_aug2.0_392.1_07444.t1 22 15 LRR_4 531 567 0.0 236.7 5.6e-09 1.0e-05 25.0
pfu_aug2.0_392.1_07444.t1 29 21 LRR_1 531 546 0.0 163.3 0.001 1.9 8.8
pfu_aug2.0_392.1_07444.t1 12 10 LRR_8 552 609 0.0 217.2 2.4e-12 4.4e-09 35.9
pfu_aug2.0_392.1_07444.t1 22 16 LRR_4 553 590 0.0 236.7 6.5e-09 1.2e-05 24.7
pfu_aug2.0_392.1_07444.t1 29 22 LRR_1 553 568 0.0 163.3 0.072 130.0 3.2
pfu_aug2.0_392.1_07444.t1 24 18 LRR_6 553 565 9.6e-21 71.4 0.096 180.0 2.7
pfu_aug2.0_392.1_07444.t1 27 21 LRR_7 553 567 1.6e-20 69.5 0.32 600.0 1.5
pfu_aug2.0_392.1_07444.t1 24 19 LRR_6 573 587 9.6e-21 71.4 0.012 22.0 5.5
pfu_aug2.0_392.1_07444.t1 22 17 LRR_4 575 610 0.0 236.7 1.4e-09 2.6e-06 26.9
pfu_aug2.0_392.1_07444.t1 29 23 LRR_1 575 591 0.0 163.3 0.0074 14.0 6.2
pfu_aug2.0_392.1_07444.t1 27 22 LRR_7 575 588 1.6e-20 69.5 0.039 72.0 4.2
pfu_aug2.0_392.1_07444.t1 8 8 LRR_9 595 697 6.2e-09 35.6 0.00086 1.6 8.2
pfu_aug2.0_392.1_07444.t1 22 18 LRR_4 598 633 0.0 236.7 4.7e-05 0.087 12.4
pfu_aug2.0_392.1_07444.t1 29 24 LRR_1 598 619 0.0 163.3 8.0e-06 0.015 15.2
pfu_aug2.0_392.1_07444.t1 24 20 LRR_6 598 610 9.6e-21 71.4 0.012 23.0 5.4
pfu_aug2.0_392.1_07444.t1 27 23 LRR_7 598 612 1.6e-20 69.5 0.0065 12.0 6.6
pfu_aug2.0_392.1_07444.t1 12 11 LRR_8 612 656 0.0 217.2 4.8e-07 0.00089 18.9
pfu_aug2.0_392.1_07444.t1 29 25 LRR_1 622 641 0.0 163.3 0.02 37.0 4.8
pfu_aug2.0_392.1_07444.t1 22 19 LRR_4 626 657 0.0 236.7 0.0086 16.0 5.2
pfu_aug2.0_392.1_07444.t1 24 21 LRR_6 626 632 9.6e-21 71.4 3.3 6200.0 -2.1
pfu_aug2.0_392.1_07444.t1 27 24 LRR_7 626 634 1.6e-20 69.5 1.6 3000.0 -0.7
pfu_aug2.0_392.1_07444.t1 29 26 LRR_1 645 663 0.0 163.3 0.063 120.0 3.3
pfu_aug2.0_392.1_07444.t1 27 25 LRR_7 646 657 1.6e-20 69.5 2.7 5000.0 -1.3
pfu_aug2.0_392.1_07444.t1 22 20 LRR_4 648 683 0.0 236.7 0.00096 1.8 8.2
pfu_aug2.0_392.1_07444.t1 24 22 LRR_6 648 657 9.6e-21 71.4 0.83 1500.0 -0.2
pfu_aug2.0_392.1_07444.t1 22 21 LRR_4 668 706 0.0 236.7 7.4e-09 1.4e-05 24.6
pfu_aug2.0_392.1_07444.t1 12 12 LRR_8 668 725 0.0 217.2 3.5e-09 6.5e-06 25.8
pfu_aug2.0_392.1_07444.t1 29 27 LRR_1 668 685 0.0 163.3 0.057 100.0 3.5
pfu_aug2.0_392.1_07444.t1 27 26 LRR_7 668 683 1.6e-20 69.5 0.03 56.0 4.6
pfu_aug2.0_392.1_07444.t1 24 23 LRR_6 689 702 9.6e-21 71.4 0.012 22.0 5.5
pfu_aug2.0_392.1_07444.t1 22 22 LRR_4 690 726 0.0 236.7 1.8e-09 3.3e-06 26.5
pfu_aug2.0_392.1_07444.t1 29 28 LRR_1 691 710 0.0 163.3 6.5e-05 0.12 12.4
pfu_aug2.0_392.1_07444.t1 27 27 LRR_7 691 706 1.6e-20 69.5 0.0061 11.0 6.7
pfu_aug2.0_392.1_07444.t1 29 29 LRR_1 715 727 0.0 163.3 0.73 1400.0 0.1
pfu_aug2.0_392.1_07444.t1 24 24 LRR_6 715 726 9.6e-21 71.4 1.7 3100.0 -1.2

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_392.1_07444.t1 gi|676430757|ref|XP_009046031.1| hypothetical protein LOTGIDRAFT_171582 [Lottia gigantea] 0.0
pfu_aug2.0_392.1_07444.t1 gi|260819644|ref|XP_002605146.1| hypothetical protein BRAFLDRAFT_80919 [Branchiostoma floridae] 0.0
pfu_aug2.0_392.1_07444.t1 gi|198415792|ref|XP_002126526.1| PREDICTED: plant intracellular Ras-group-related LRR protein 6 [Ciona intestinalis] 0.0
pfu_aug2.0_392.1_07444.t1 gi|524916079|ref|XP_005112822.1| PREDICTED: leucine-rich repeat protein SHOC-2-like [Aplysia californica] 0.0
pfu_aug2.0_392.1_07444.t1 gi|675890630|ref|XP_009030817.1| hypothetical protein HELRODRAFT_194556 [Helobdella robusta] 0.0

Transcript
Transcript IDpfu_aug2.0_392.1_07444.t1
Definition- 
>pfu_aug2.0_392.1_07444.t1
atgagcgctagacggaagaagaaggatgagaaacccccacccgccatcggcccggggagtaaaataatttctctcccaga
tcctcttaagaaattcttgaagcgcctccctgacagcaagaaggttcacatgaaattcggcaccgcaaacttcaaatctt
tgccgacagaaatttacaacaacgaggagcttgcagaactagccgttcgttttaatgccgaaaacaaccgactgaagcga
cttccgaaagcaatatcggtgttggaaaatttagaatacatagatgtgaaaaataatgcattgtctgcattccctggctc
ggtgtccaagctgaaaaagttggaaattttggatattgagaacaatgccatcaaaaagcttccgccagctatacacaagg
catcggggctcgtccagttattggcatcgaataacaggatccgaactctgccgaaaaacatcgggaaatcctctattact
tatttggacgtgtcaggtaacttgatcaagtcatttaagaaaggcgtgtacgaaatgacggcggaagtcaatctctccga
caaccggataacggaaatgccaccggcgagcgtcaaaaagccgaatatacagaagctcaacctagcaagaaacggtgtca
ccttcatgccggataatatcgacaagttaacgcggttgacatggattgatttatcccataatgccttacaggaacttccc
gctcaaatcggaggagtcaaattcctgcactatctagatatatcgcacaatcacattaaggcccttccggaggaaatttg
taatctagcgtacgcgctcgattttttcgacgcatcacacaatgaaatccccgttctgcctaacgacattcataaattgc
aaaaattgcgtcattttgacgtttctggaaatgaaatcgaatatttgccggagggaatcaacaagctgccgtgtctcctg
acattatgtgtctcaaacaacaaactcaaatcgatgaagtttgcggtttatctgaagcagctagaacatcttcacatgtc
caaaaacgaagtagaggtggtaccccaggaggtcgaccaaatgaagagcttgatcacactagatatctcgtggaacaagg
taaaggagatacctgatgctctcggcaaggtgaagagccttaaagctttaaatgtctgcggaaacaagctgaccgtgtta
cctgataaaataggagtcgaacaagtgctaacttctcttgatatctcgcacaatcgcctgaccgcgttgccacaagatct
acgcaaacttcgcaatctggagactttccacataagtcataatgaaatcccagcgatgccaaagtcaatcgattacctct
atcagttgaggtccttagatatagctactaaccttatcaatgaactcaacctaccgaaaaccttgaccagtttgaattta
tcggataatccgctcgcaattaatccgtcggacatgcgttccgctattgtagtcatgggagacaaggatcacctaagaaa
cctgacgtcattaacattatgtagcctcggtttggatgaacttccgccgagcgtctacaacctgcgatgtctaaagcatt
tgaatgtttcaaacaattcgctcaagaaccttggagaggtgtgtaagcttaggggactcgagtcattaaatgccggaaac
aacgaaatttccggacttccgagcaaaatcggcactatgtgcaaactccagcaattacatatatctcataatgaaattag
cgaattccaaccaaccatggtgaagttggtgtcattgcgtgaactagatatgtcgcacaacaaactaagcttacttccgg
ataatttcggggatttgaacaaacttattgcgatggacttgtcgcacaatgaaatactgacatttccaaaggaccaaata
gacgtattagcttcacttcttagactcaatatttctgaaaaccatatagacgttatgccaatggaattcccttacttgta
tcgattgcaagttttaaaagccgctggtaacgaccttaaatcccttccttcggaaatggataagatgaaatctctgcaga
ttttagatttatccgataacgtcttggaatcacttccggaacggatatgtaaaatgccagaaataaaagaaatcgatgtc
accgacaacaaaataactgtgggatggccaaaagcatgggaaaacctcagacagaaaataacaattaagagcgctgatca
gtccgcctacaagaagcgggaaccgcgcgaacgaccgtccgacaaagtagccgagacgcaagtttccccgaaaccaagca
agaaaggcatcaagaaaaaggtttccccgataggaaccccacctactcctattaaagatgaatatgacagttatatacaa
aatgatctgtga

Protein
Protein IDpfu_aug2.0_392.1_07444.t1
Definition- 
>pfu_aug2.0_392.1_07444.t1
MSARRKKKDEKPPPAIGPGSKIISLPDPLKKFLKRLPDSKKVHMKFGTANFKSLPTEIYNNEELAELAVRFNAENNRLKR
LPKAISVLENLEYIDVKNNALSAFPGSVSKLKKLEILDIENNAIKKLPPAIHKASGLVQLLASNNRIRTLPKNIGKSSIT
YLDVSGNLIKSFKKGVYEMTAEVNLSDNRITEMPPASVKKPNIQKLNLARNGVTFMPDNIDKLTRLTWIDLSHNALQELP
AQIGGVKFLHYLDISHNHIKALPEEICNLAYALDFFDASHNEIPVLPNDIHKLQKLRHFDVSGNEIEYLPEGINKLPCLL
TLCVSNNKLKSMKFAVYLKQLEHLHMSKNEVEVVPQEVDQMKSLITLDISWNKVKEIPDALGKVKSLKALNVCGNKLTVL
PDKIGVEQVLTSLDISHNRLTALPQDLRKLRNLETFHISHNEIPAMPKSIDYLYQLRSLDIATNLINELNLPKTLTSLNL
SDNPLAINPSDMRSAIVVMGDKDHLRNLTSLTLCSLGLDELPPSVYNLRCLKHLNVSNNSLKNLGEVCKLRGLESLNAGN
NEISGLPSKIGTMCKLQQLHISHNEISEFQPTMVKLVSLRELDMSHNKLSLLPDNFGDLNKLIAMDLSHNEILTFPKDQI
DVLASLLRLNISENHIDVMPMEFPYLYRLQVLKAAGNDLKSLPSEMDKMKSLQILDLSDNVLESLPERICKMPEIKEIDV
TDNKITVGWPKAWENLRQKITIKSADQSAYKKREPRERPSDKVAETQVSPKPSKKGIKKKVSPIGTPPTPIKDEYDSYIQ
NDL

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Okinawa Institute of Science and Technology
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