Gene
| Gene Model ID | pfu_aug2.0_3921.1_05923 |
|---|---|
| Locus | scaffold3921.1 : 10135 ... 49785 : - |
| To GenomeBrowser | scaffold3921.1:10135..49785 |
| Genes list of scaffold | scaffold3921.1 |
| Synonym | pfu_aug1.0_1757.1_08088 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3921.1_05923.t1 | 3 | 1 | Fibrinogen_C | 2 | 24 | 0.0 | 166.5 | 0.026 | 190.0 | 1.4 |
| pfu_aug2.0_3921.1_05923.t1 | 3 | 2 | Fibrinogen_C | 40 | 161 | 0.0 | 166.5 | 1.0e-24 | 7.4e-21 | 74.8 |
| pfu_aug2.0_3921.1_05923.t1 | 1 | 1 | Sushi | 270 | 320 | 1.3e-09 | 38.2 | 5.3e-13 | 3.9e-09 | 36.7 |
| pfu_aug2.0_3921.1_05923.t1 | 3 | 3 | Fibrinogen_C | 347 | 515 | 0.0 | 166.5 | 3.6e-32 | 2.7e-28 | 99.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3921.1_05923.t1 | gi|115618394|ref|XP_001188867.1| | PREDICTED: ryncolin-1-like [Strongylocentrotus purpuratus] | 6.0e-26 |
| pfu_aug2.0_3921.1_05923.t1 | gi|390366082|ref|XP_794188.2| | PREDICTED: microfibril-associated glycoprotein 4-like [Strongylocentrotus purpuratus] | 5.0e-25 |
| pfu_aug2.0_3921.1_05923.t1 | gi|170040717|ref|XP_001848136.1| | fibrinogen gamma chain [Culex quinquefasciatus] | 1.0e-23 |
Transcript
| Transcript ID | pfu_aug2.0_3921.1_05923.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3921.1_05923.t1 atgggcttcaaaaatggtatattttggcagtcctggaaaaacgtcatttttgggctcattttcgagaaacttcatcttaa ctgtgggaacttacattcgacaaatatatcaagtgttggtgttggacagatcttaatgatcaatagccaagaaggcggtt acctttactgtgatacaagttatgacagaagttattggacggtcatccaacaaagaacaagtgttagaggaaatgatgcg tttaacagaacttgggaagaattcaaaaatggatttggatcattgaacgatgactattggatagggaacgagcaattgca ccgaatgaccggaagtcgtgagtatgaagtactgatattattatggattctggacaagaactacatacgtcagagaacgg ctagatacaaaattttcaaggttgaaagtgaaagtagtaattatgaactacgaattgacaatttctacgaagaaggaagt gacgaagttgagcatgacttcgtaattcgtgcgcacgactttgtaactcgtgcgactggcctattgagttgtggtcatga ctttctgtgttactcattcaaccaattggaaactaagccgttctggagaagaagtttaaaatgtgaaaagttaacgacgt cggacgacgacggacgacgacgacgacgacggcgacgacgacgatggacgacggacgacagacgcaacactatgacaata gctcacttgagcctatggctcagaaacttaatagagaaataccttcttacctacatagatggtaactaccacagtggctc aatagattgcggattcccgccagcaatttcaaattcaaaaatagaccaaagcaatggaatcggagtatattcaaaggtca tctacgaatgtgagaatggatataaatctactggacggtttaaaattacgtgtcaagaaaatgggcaatggtcaagtaca gatttccgatgccttaaaggtatcctgaatatccctaaaatcatttctaaaaatcctcgtaggacacatggttgtcacta tcaacagcagaggatgacatcctattcttcatcgatagttaaggttaagtacaagaatggagatctttactgtaaccacg tctttgacgggggtaactggacgataatccaacaaaggacgagtggaataggaggtattacatttgaccgaaattggaat gaattcgtcaacggatttggatcaattaacagtgactattggttaggaaacgaaatgatacataggcttacgagagacta tgcttatgagttgcttattttgctctggaaggatgaggggattaatacacgtcagcaaactgccagatataagcacttca aaattaaggataacaatgagaagtacaaaatatacatttctgactatgagtatgaaaccagcgatgcaggaaatgtaata tcagatcggaatgggtatggtttctccaccaaagatcatgactcaacgacactgaactgttcagtggcacaaaaggccgg ttggtggcataaaaccatacaaaacaacatagagaaatctttgaaaggaggaaacgtcaatgtaatgaaatggaagtggt actatgacgagtatgacaagtcaatgattctgatcagaccaaatatctaa |
|
Protein
| Protein ID | pfu_aug2.0_3921.1_05923.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3921.1_05923.t1 MGFKNGIFWQSWKNVIFGLIFEKLHLNCGNLHSTNISSVGVGQILMINSQEGGYLYCDTSYDRSYWTVIQQRTSVRGNDA FNRTWEEFKNGFGSLNDDYWIGNEQLHRMTGSREYEVLILLWILDKNYIRQRTARYKIFKVESESSNYELRIDNFYEEGS DEVEHDFVIRAHDFVTRATGLLSCGHDFLCYSFNQLETKPFWRRSLKCEKLTTSDDDGRRRRRRRRRRWTTDDRRNTMTI AHLSLWLRNLIEKYLLTYIDGNYHSGSIDCGFPPAISNSKIDQSNGIGVYSKVIYECENGYKSTGRFKITCQENGQWSST DFRCLKGILNIPKIISKNPRRTHGCHYQQQRMTSYSSSIVKVKYKNGDLYCNHVFDGGNWTIIQQRTSGIGGITFDRNWN EFVNGFGSINSDYWLGNEMIHRLTRDYAYELLILLWKDEGINTRQQTARYKHFKIKDNNEKYKIYISDYEYETSDAGNVI SDRNGYGFSTKDHDSTTLNCSVAQKAGWWHKTIQNNIEKSLKGGNVNVMKWKWYYDEYDKSMILIRPNI |
|