Gene
| Gene Model ID | pfu_aug2.0_3950.1_02526 |
|---|---|
| Locus | scaffold3950.1 : 1 ... 14735 : - |
| To GenomeBrowser | scaffold3950.1:1..14735 |
| Genes list of scaffold | scaffold3950.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3950.1_02526.t1 | 2 | 1 | Prominin | 88 | 155 | 3.7e-22 | 77.7 | 7.8e-17 | 5.5e-14 | 50.6 |
| pfu_aug2.0_3950.1_02526.t1 | 2 | 2 | Prominin | 164 | 361 | 3.7e-22 | 77.7 | 1.5e-11 | 1.1e-08 | 33.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3950.1_02526.t1 | gi|676428711|ref|XP_009045364.1| | hypothetical protein LOTGIDRAFT_156479 [Lottia gigantea] | 5.0e-26 |
| pfu_aug2.0_3950.1_02526.t1 | gi|663241704|ref|XP_008493771.1| | PREDICTED: prominin-1 isoform X2 [Calypte anna] | 3.0e-13 |
| pfu_aug2.0_3950.1_02526.t1 | gi|527260566|ref|XP_005148533.1| | PREDICTED: prominin-1-A-like isoform X2 [Melopsittacus undulatus] | 4.0e-13 |
| pfu_aug2.0_3950.1_02526.t1 | gi|701423381|ref|XP_010001396.1| | PREDICTED: prominin-1 isoform X2 [Chaetura pelagica] | 5.0e-13 |
| pfu_aug2.0_3950.1_02526.t1 | gi|675604106|ref|XP_008937260.1| | PREDICTED: prominin-1 isoform X4 [Merops nubicus] | 1.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_3950.1_02526.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3950.1_02526.t1 atgtcagaaatgtgtatcttggctttgtatgcacatatggactgtgatttaatgataattactgctttactttatttact tcctcattccactggccaatatgacagatctgtaccaaaatgttcttatctgaaaactttaaaaacagaatgcacactac tactaaatcttcttatcaaatgcattggagctttcagggatatagagacaatcataagtaatggtacatatgacaagtta cagggaagatggcaagatatggccaaagtatttggtggatacgcagcctgtgttatttttggactgttatttatcatcgc catgccgattgcagggttgttgttctgttgttgctacgcgtgctgtaaatgttgtgggagagctcggtctaaagaggatc ctccaaacgccaaatgtaaacgtacaacatactgtttcctgctggctgtcatggcaacgatgatgcttgatgacagagga acgtatcaatacttacaaagtggaattaaagatctggtggattttgctgatgaaacacaaactgctttgattacgactac cgtgaacacagttgattcgacagtgacagatataattaataaagtgaatgatactgcatatacaacagtggataaggtga taactgtgattaacgccgatcaacttcttagacaaacagaggatctcggaaaacatgtaacagaatcattggcgagtttg acagatgtggagacaggtttggatactctcaacaaccttgcttcaactatcagcaacactctcatggagatagaaagaaa tataacacaagagtgtgctgatgctgggataccgcaatgtccagttccaagtttgtcgttaggaccagacttttctgggc taagtaacctatcagatgttgcgcggtcagttgctcagtctgttaatgtcagccagttaaccacacaggcaagaggagaa tttaacaagaccataaatgaagttaacagtcaagttacaaactccattgcagatgctcagagaacaacagaacaaataaa aacagatgtaaatagagagatcaacactatcaatgatacagtacagccgttg |
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Protein
| Protein ID | pfu_aug2.0_3950.1_02526.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3950.1_02526.t1 MSEMCILALYAHMDCDLMIITALLYLLPHSTGQYDRSVPKCSYLKTLKTECTLLLNLLIKCIGAFRDIETIISNGTYDKL QGRWQDMAKVFGGYAACVIFGLLFIIAMPIAGLLFCCCYACCKCCGRARSKEDPPNAKCKRTTYCFLLAVMATMMLDDRG TYQYLQSGIKDLVDFADETQTALITTTVNTVDSTVTDIINKVNDTAYTTVDKVITVINADQLLRQTEDLGKHVTESLASL TDVETGLDTLNNLASTISNTLMEIERNITQECADAGIPQCPVPSLSLGPDFSGLSNLSDVARSVAQSVNVSQLTTQARGE FNKTINEVNSQVTNSIADAQRTTEQIKTDVNREINTINDTVQPL |
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