Gene
| Gene Model ID | pfu_aug2.0_397.1_23971 |
|---|---|
| Locus | scaffold397.1 : 82545 ... 99115 : - |
| To GenomeBrowser | scaffold397.1:82545..99115 |
| Genes list of scaffold | scaffold397.1 |
| Synonym | pfu_aug1.0_830.1_15248 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_397.1_23971.t1 | 3 | 1 | IMS | 8 | 38 | 1.5e-27 | 96.2 | 1.7e-10 | 6.2e-07 | 29.3 |
| pfu_aug2.0_397.1_23971.t1 | 3 | 2 | IMS | 43 | 171 | 1.5e-27 | 96.2 | 4.0e-21 | 1.5e-17 | 63.7 |
| pfu_aug2.0_397.1_23971.t1 | 3 | 3 | IMS | 243 | 268 | 1.5e-27 | 96.2 | 1.2 | 4600.0 | -2.8 |
| pfu_aug2.0_397.1_23971.t1 | 1 | 1 | IMS_C | 252 | 377 | 6.8e-18 | 64.8 | 4.2e-21 | 1.5e-17 | 63.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_397.1_23971.t1 | gi|676489096|ref|XP_009064826.1| | hypothetical protein LOTGIDRAFT_222102 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_397.1_23971.t1 | gi|597753546|ref|XP_007238600.1| | PREDICTED: DNA polymerase eta [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_397.1_23971.t1 | gi|657784534|ref|XP_008319579.1| | PREDICTED: DNA polymerase eta [Cynoglossus semilaevis] | 0.0 |
| pfu_aug2.0_397.1_23971.t1 | gi|94158209|ref|NP_001035337.1| | DNA polymerase eta [Danio rerio] | 0.0 |
| pfu_aug2.0_397.1_23971.t1 | gi|410901122|ref|XP_003964045.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_397.1_23971.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_397.1_23971.t1 atggacagggttgttgcccttgtggatatggattgcttttacgtacaggttgagcagaggctgaatccagaattcaaggg taaaccttgtgcagttgtacagtataaaacttggaaaggaggaggatttagggaggcaggtgcagaagttatcgctgtac tcagtaaattcagtggtcaggtagagcgtgccagtattgatgaagcatacatagaccttacagaggaagttaagaagagg ataacaaagctatcaggggatagagtcctggtacaacaactacaaaatacctttgttgtaggccacggagatgataaaag tggagaaaacagagaggagggagttgaccagtggctgaccacagcctttgaggaggaggtctcagacaatgatataagac tggcagtgggggcactgatatcagaggaaatgagggctgcagtgtacgcagaaactggattcagatgctctgctgggatt gcacataataagatgcttgccaaattatcatgtggcctacacaagcctaacaagcagactgtcctgcctcacgcatcagt tcctatactgtacagtactctacccatcaagaaaatacgtaacttaggtgggaagtttggacagtcattggtagaacaac tcggcgtagaaaacatgggtgatttgtgtaaattttctttgaaggagttacaggcatgctgtggagacaagtctgggatg tggctgtatgatgtatgtagaggtattgagtatgaacctgtatcagccagacaactaccaaaatctatcggctgtagcaa aaacttcccaggcaaaacatgccttgatacaagggaaaaggtcaaacattggttgggagagctggcaggagaagtagcag agagactagtcaaagatagagaaactaatttgcggatggcgaagtctatgacagtgtatgtaagatacatgggtacacct tctcagacagcatcaagggcctgtgctatcactcagtataaggcagacaaaatagctaacaatgcttttgccctcctaca acaattcaacctggctcctgcacatcaaccaacatggacacctcctatcctttgtctggggatatcagcgagcaagttta ttgatgaatcagcagggaacaatagctctatcacatctttccttggaagtcagaaatcaaaatcaagcagtgatctgctt tcaagtcaattttctccaaaggagtctatagtaagaggaccaaggcgtggaagtatacagagtttcttttcacaaacaag tactcaaagatttcaagataccattaacacatcttcatacaatagtgaaaatgatgatattgcagatggagcaagctcag aaacatcgaaaaatatttctttgtctaaagagcctgttgctggaccaagtgccttgaaaactctagacaataatgtcttg gatagacattctgaaaatgggtctaaccgaatgggatttttcgtgcgtaaaatgtttgaaatccaacaggcaaagaagga gaaaggggaagatagtcatgatcatagaaggaattcaaataatatagaagtgatgaatagttttatgaaaaaatatacaa tttctgaacaaaatggaaagctagatggggaaaggactgaggatttgaataatgttgaaaatgggaccacaagaacatca gatgaagatttagaaggttcaatcagctctccttcaaaaagagtgcagtctatgagcgaagacattattgaatatgaaga accagagccaataccaggaacgtcttataatgaagaaataactgctcgaagactaagtgagatgcatgcaaccgaggaag gaacatctagaagacctagtgagttgtatgacatagatcctaattctgtggattcagatgtttttgacgcgcttccatta gatatacaaaatgaaattaaggcagaaatgggacgtcaaaatggattgaaatctccaattaaaacttctgctctacctca agaaaatggtggaaactgtgatatacaacatgtagagaatgcagcaacttatggtgatctgtttacctcttgtgaaaaat gtgggaaaaaactacaagtgtgggaaatggaagagcatatggactttcactttgctcaagagctccaacaagagttgaga cagagtgacgcacccttgggtacgtcgaacaggagcgaaaacaatagacagcctgtgggagcaggtacaaaaagaaaact tagtgccgctacttcaacaagaggacgaaagaaacaaaagccaaatgttgataaatgtcaaagaatggataattttataa ttaaaagataa |
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Protein
| Protein ID | pfu_aug2.0_397.1_23971.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_397.1_23971.t1 MDRVVALVDMDCFYVQVEQRLNPEFKGKPCAVVQYKTWKGGGFREAGAEVIAVLSKFSGQVERASIDEAYIDLTEEVKKR ITKLSGDRVLVQQLQNTFVVGHGDDKSGENREEGVDQWLTTAFEEEVSDNDIRLAVGALISEEMRAAVYAETGFRCSAGI AHNKMLAKLSCGLHKPNKQTVLPHASVPILYSTLPIKKIRNLGGKFGQSLVEQLGVENMGDLCKFSLKELQACCGDKSGM WLYDVCRGIEYEPVSARQLPKSIGCSKNFPGKTCLDTREKVKHWLGELAGEVAERLVKDRETNLRMAKSMTVYVRYMGTP SQTASRACAITQYKADKIANNAFALLQQFNLAPAHQPTWTPPILCLGISASKFIDESAGNNSSITSFLGSQKSKSSSDLL SSQFSPKESIVRGPRRGSIQSFFSQTSTQRFQDTINTSSYNSENDDIADGASSETSKNISLSKEPVAGPSALKTLDNNVL DRHSENGSNRMGFFVRKMFEIQQAKKEKGEDSHDHRRNSNNIEVMNSFMKKYTISEQNGKLDGERTEDLNNVENGTTRTS DEDLEGSISSPSKRVQSMSEDIIEYEEPEPIPGTSYNEEITARRLSEMHATEEGTSRRPSELYDIDPNSVDSDVFDALPL DIQNEIKAEMGRQNGLKSPIKTSALPQENGGNCDIQHVENAATYGDLFTSCEKCGKKLQVWEMEEHMDFHFAQELQQELR QSDAPLGTSNRSENNRQPVGAGTKRKLSAATSTRGRKKQKPNVDKCQRMDNFIIKR |
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