Gene
| Gene Model ID | pfu_aug2.0_397.1_23973 |
|---|---|
| Locus | scaffold397.1 : 108526 ... 112064 : + |
| To GenomeBrowser | scaffold397.1:108526..112064 |
| Genes list of scaffold | scaffold397.1 |
| Synonym | pfu_aug1.0_830.1_15250 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| macrophage mannose receptor 1-like | GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_397.1_23973.t1 | 3 | 1 | Lectin_C | 8 | 98 | 7.0e-16 | 58.7 | 0.25 | 920.0 | 0.5 |
| pfu_aug2.0_397.1_23973.t1 | 3 | 2 | Lectin_C | 185 | 197 | 7.0e-16 | 58.7 | 4.0 | 15000.0 | -4.2 |
| pfu_aug2.0_397.1_23973.t1 | 3 | 3 | Lectin_C | 207 | 310 | 7.0e-16 | 58.7 | 1.9e-19 | 7.0e-16 | 58.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_397.1_23973.t1 | gi|260807733|ref|XP_002598663.1| | hypothetical protein BRAFLDRAFT_67064 [Branchiostoma floridae] | 3.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_397.1_23973.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_397.1_23973.t1 atgaattgcatatttgacaaaggaggggatctccacaataccaggtcgcagcacccacagcaaaaccccaaaacacacaa tgcaaaaacacaaagcagacaagcacagaaagagacgcataagggacaaggaacgtcaacgcacaacacagaaacatcaa acacaaagactacacataaaccaatgaaaccaatgggcaaccggcgccgacttaggacggccatctgccacggaaatagc agaaggtgtggttatcctggattacctcatgttaagttcatagactgtcaacaacttctgtcaatacccgatgagaagtg ttttgaatcaccatgggtcacacgctggacgaatgatgtcagagcttacgtcattcaaatatatgaactgttcacagagt atgttgagctggtgtctgaagatatcaatgcgactcttagtgttagccagcgcctgaaaaaggctatagcagaacttcaa atgatagttaaagatttaccaaagtctcctgccaagaaagatgaacgaattcaaaaaatgtatacaggacacaaatcatc agaaaattgccaattgttcatgtttggtgacactgtgtacttcgtatctgatttcagactcacttggttagaagcatggt ctttttgtaggagtaaaggtgcacttctagtaaacattccaaattcaacgataagcagatatcttatttcaaaattggat ccatacaatggcgacttttggattgggggcatctgggctcctggaggatatttatggagaacagagttcgggtacagtcc gatgacgtggtcaaactgggctcccggtgagccaaatcgtaaagaccaaaactgtgtccagttgtggaaaaacgcaggtc acaaatgggacaactacgattgcgaatttaggaaaactttcatttgcagcagaactttaccataa |
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Protein
| Protein ID | pfu_aug2.0_397.1_23973.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_397.1_23973.t1 MNCIFDKGGDLHNTRSQHPQQNPKTHNAKTQSRQAQKETHKGQGTSTHNTETSNTKTTHKPMKPMGNRRRLRTAICHGNS RRCGYPGLPHVKFIDCQQLLSIPDEKCFESPWVTRWTNDVRAYVIQIYELFTEYVELVSEDINATLSVSQRLKKAIAELQ MIVKDLPKSPAKKDERIQKMYTGHKSSENCQLFMFGDTVYFVSDFRLTWLEAWSFCRSKGALLVNIPNSTISRYLISKLD PYNGDFWIGGIWAPGGYLWRTEFGYSPMTWSNWAPGEPNRKDQNCVQLWKNAGHKWDNYDCEFRKTFICSRTLP |
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