Gene
| Gene Model ID | pfu_aug2.0_397.1_23985 |
|---|---|
| Locus | scaffold397.1 : 299371 ... 335400 : - |
| To GenomeBrowser | scaffold397.1:299371..335400 |
| Genes list of scaffold | scaffold397.1 |
| Synonym | pfu_aug1.0_8448.1_67875 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_397.1_23985.t1 | 4 | 1 | EGF | 419 | 450 | 9.0e-13 | 47.9 | 2.0e-07 | 0.00097 | 19.0 |
| pfu_aug2.0_397.1_23985.t1 | 4 | 2 | EGF | 459 | 489 | 9.0e-13 | 47.9 | 6.6e-11 | 3.3e-07 | 30.1 |
| pfu_aug2.0_397.1_23985.t1 | 4 | 3 | EGF | 497 | 526 | 9.0e-13 | 47.9 | 3.1e-05 | 0.15 | 12.0 |
| pfu_aug2.0_397.1_23985.t1 | 4 | 4 | EGF | 652 | 683 | 9.0e-13 | 47.9 | 0.0066 | 32.0 | 4.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_397.1_23985.t1 | gi|573879355|ref|XP_006627896.1| | PREDICTED: protocadherin Fat 3-like [Lepisosteus oculatus] | 2.0e-23 |
| pfu_aug2.0_397.1_23985.t1 | gi|593721925|ref|XP_007107192.1| | PREDICTED: protocadherin Fat 3-like [Physeter catodon] | 2.0e-23 |
| pfu_aug2.0_397.1_23985.t1 | gi|591304581|ref|XP_007079071.1| | PREDICTED: LOW QUALITY PROTEIN: protocadherin Fat 3 [Panthera tigris altaica] | 7.0e-23 |
| pfu_aug2.0_397.1_23985.t1 | gi|755768492|ref|XP_011284836.1| | PREDICTED: protocadherin Fat 3 [Felis catus] | 7.0e-23 |
| pfu_aug2.0_397.1_23985.t1 | gi|410909630|ref|XP_003968293.1| | 1.0e-22 |
Transcript
| Transcript ID | pfu_aug2.0_397.1_23985.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_397.1_23985.t1 atggaaaaggaatcgaaagtgtctgagaaggttccacttctagatcatactgttcacgacgaatcaaagatacaaccact gaagcccaaaaatgaccgtttttcgttttctgcattgatagtggcctttacaggatttgcccaactatttgttgctgttc cagtggtaggatgctttcagattgctgcaattgcgatgtttcgttacataatgtcaaagatgactcccgctcattttcaa gatgaacaggaacgcgttattctgattgttgtgaaactacgattgttgacgggttgggtattaaccgagggaccttgtgg aaggaactgtaccgaggctgacgtgggcatgagtacgaacagaaccagacgccttgccatcgctgcttacaaccagtctg tatttggggactggggactggaactaggacaggggaacaatacttacatcacggatgatgtcaatgatagaatagacgag agggtacaggctgtgaaccagaagcttgggtgggagttagacgctgcagaggttctactagatgtacctggtgacacgga tatagtatttggcatcaaccgtgaatatatgatacacatccctgcgatggacgatgacggcgatcacgtgacttgtagat ctgctatctacgtggaatttctgggatttagagagcttcatccatataaaaacaacatacgggttcaaaagaactgtgta gtgactttttcaacgaaaaccaagtttcaagtgaacgacaccctggtgataggggtgatggtagaggataaaccgagacg aaacgtagagcttataggatcaaatagtggcattaaactgtggaaggcctacgaaaaccctcttagttccatatctgtac agttttacgtttctgtggtggatcacatcccagaaccaaagttcttggttccacccactccggaaaacaataagatgttc atcgtctatgtaggagtacccttccatgtcaaactttacgcaacacctacagatatcaatggtttcgaacaaatcaagaa gttcacatttcaaagaagagacggagaagatgttgttgtttcaaatatgtcggatgccccatcccatggtcccagaacaa agatggtagaggtcacatggttaccggaagccaaggaattgggcgatcatattttaagtgctttggttcttgatacggct ggaatgatggcagtcacaagttgtacaaacgtggtcattgttcctaaagatccatgtcaggacaacccttgtaacaggag aggaacatgtttacaaaccaagacgtcgccaggattttactgcttgtgtaatccacaattcacgggcgatatatgtcaga cagagcgggacaaatgtaagcctaatccctgtcaaaatggagcgaaatgtatgtcctacggaataatgtactactgtaac tgtccgacacatttcacaggaaagaactgtgaccatgagttgaaacactgtgatggtaatgcatgtggtaacaacagtgt ttgcgaggaaacaacggactcgtttatatgtcactgtgctcagaattacactggatctaaatgcggtactacgcctgttt tcgtgtctccaactccaagttatggatcggagatcctttgtgatacgttcaaaaccagtgactgtcagttcccagtttat attgaacacaaggacacacattttactatgcgcggtatgtttcaaaaagaagaaattagatcagaggtaggtaacccagt gtatacaacatttgaatccgtagctatgaagaggatatatatggtctcaatcaaacctcgtgtagatcggaacatcattt ctgttgacgaaaatacgacttttgatatctgctttactctgtccaaagactccagtccaaacatagtggatgataccagg tgcttctcgataagatacgtaaacagaggtccctgtgtcggaaattctgcccagtgtctgaatggtggacattgctacac agatggtttgaaagatgtgtgtttttgtcaactcggatacaatggacctttatgtcaaaattcaataaagctgaagaata cgacaacagaatggagaagtaatcacagtttgagtgcatttgttgaccttggcataccaccaatcgtacagtgctacagg aatgaaccatgtaacataccacttttagcctctgtggatccaacgcatggcggttgtgttagcgttgtcgttttcagacc aagaatatcgcaaggttatatagatacagaagtaaatctggaggaaatacaaatagagaaagtatcatcttcctgtaact ttcaaactaccataaccacaagaagcaacaacacgggactaaaggcactctgtttacaagacaagatggatgacaaatat gtttctgacgaagtctgtctccagctgaattttacaaatggttcccctacgcctatcaataagaacaaggcatactttgt gagccctacactaccaacaggttcagaagttgagtgtgttgtaggagaaccatgccatcttggtctttggatgtcaaata gagatggtgatattaaatgtcctgaggtgaaatcaactttaccacctgacgacggtgtatacgtatttagaaatgaatcg tcaggaagtccatgctctactaccattgtttttatttcggataacgtcacaacctacaacgtctgctttacgcttacgtc gcaaagagcacaacccagaataggccctaacattacaaggtcgtccagcatactaaagggaccaatacatattgtaagat acccctcaatgggcaacgatacctttattgcgtcactggaaattaacagtaccaccgaggggaatcatgacgtttgtgtg gcattaaattctaaacagggtagagagtgtaaggtaaagcagacagtcattgcaccagcatcacggataatgacaacaac tcaaagtggaaacaaatgtgtcactgacttgacgacatttatggctcccggacagcacgagaaaacaatatgcttccgga gttcaacaacttgcttaactgataaaacgtcacctcatcattacagaggcacgtatgaaaaacggtgtgttgtggtgaaa aacaacagaacttataccgaaccacctgaaggctcaacttcaagtgttcccgtaacggaattcagtagccatacctccac atcttatctttcgacttttgattcgtcgtcacagagctattctacagagccttcaacaaagttttctacagaagggctta ccatacctgcttcatctgtccaaagcacgccaatttcatcagcgaaactccactcttcgacagatagaactaactctgag aaaacaacttctgaactgtcatcatattcacatgatacctctaccatgaattcaccattaacaactgaagaaaaagttat ttcaagtgcatcgacagatcaatccacatcaaatgatttacaaactatcgaaacttcaaccgtgttaacttcatcatctg attcgccttccaatcctacaggttggtcgtctcctacaactgaaagttcggtaacatcagattccacagttcaaacagct tcgtcaagtttgttttcatccgattccttaacaacaactgatgcattcaaatttacaacgacgaactcgcttagttcgat tgggactattcagtccgatttaacaacgcaaaaaactattaatggtattaatccaacatttcactcgagacaaccaaaca cttacagttccaaatcgccaacgaacattgcctcaatctcaacagtgagatatttcaccacagataaggacactacctca ctacaaaacttccactctattccaaataaagctccatatacgagtgattcaaccgaccttccatcaagcgaagtatcgtc cccatcacctacgcaagagatgcataccacaccacctaacgaagtcctcacaagatattccagtagttcggagacaacga gagatacatttgcatcaaacagcagtgtaagtaccgtaatagagctgacaacgacaacaatggatacaaatgaccttacc acagccaccgcaagcaacagggcttttacctcagacaacgtgactgcaatgcctatgtctcaaaatacatgtccaggaat aagtgagtattga |
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Protein
| Protein ID | pfu_aug2.0_397.1_23985.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_397.1_23985.t1 MEKESKVSEKVPLLDHTVHDESKIQPLKPKNDRFSFSALIVAFTGFAQLFVAVPVVGCFQIAAIAMFRYIMSKMTPAHFQ DEQERVILIVVKLRLLTGWVLTEGPCGRNCTEADVGMSTNRTRRLAIAAYNQSVFGDWGLELGQGNNTYITDDVNDRIDE RVQAVNQKLGWELDAAEVLLDVPGDTDIVFGINREYMIHIPAMDDDGDHVTCRSAIYVEFLGFRELHPYKNNIRVQKNCV VTFSTKTKFQVNDTLVIGVMVEDKPRRNVELIGSNSGIKLWKAYENPLSSISVQFYVSVVDHIPEPKFLVPPTPENNKMF IVYVGVPFHVKLYATPTDINGFEQIKKFTFQRRDGEDVVVSNMSDAPSHGPRTKMVEVTWLPEAKELGDHILSALVLDTA GMMAVTSCTNVVIVPKDPCQDNPCNRRGTCLQTKTSPGFYCLCNPQFTGDICQTERDKCKPNPCQNGAKCMSYGIMYYCN CPTHFTGKNCDHELKHCDGNACGNNSVCEETTDSFICHCAQNYTGSKCGTTPVFVSPTPSYGSEILCDTFKTSDCQFPVY IEHKDTHFTMRGMFQKEEIRSEVGNPVYTTFESVAMKRIYMVSIKPRVDRNIISVDENTTFDICFTLSKDSSPNIVDDTR CFSIRYVNRGPCVGNSAQCLNGGHCYTDGLKDVCFCQLGYNGPLCQNSIKLKNTTTEWRSNHSLSAFVDLGIPPIVQCYR NEPCNIPLLASVDPTHGGCVSVVVFRPRISQGYIDTEVNLEEIQIEKVSSSCNFQTTITTRSNNTGLKALCLQDKMDDKY VSDEVCLQLNFTNGSPTPINKNKAYFVSPTLPTGSEVECVVGEPCHLGLWMSNRDGDIKCPEVKSTLPPDDGVYVFRNES SGSPCSTTIVFISDNVTTYNVCFTLTSQRAQPRIGPNITRSSSILKGPIHIVRYPSMGNDTFIASLEINSTTEGNHDVCV ALNSKQGRECKVKQTVIAPASRIMTTTQSGNKCVTDLTTFMAPGQHEKTICFRSSTTCLTDKTSPHHYRGTYEKRCVVVK NNRTYTEPPEGSTSSVPVTEFSSHTSTSYLSTFDSSSQSYSTEPSTKFSTEGLTIPASSVQSTPISSAKLHSSTDRTNSE KTTSELSSYSHDTSTMNSPLTTEEKVISSASTDQSTSNDLQTIETSTVLTSSSDSPSNPTGWSSPTTESSVTSDSTVQTA SSSLFSSDSLTTTDAFKFTTTNSLSSIGTIQSDLTTQKTINGINPTFHSRQPNTYSSKSPTNIASISTVRYFTTDKDTTS LQNFHSIPNKAPYTSDSTDLPSSEVSSPSPTQEMHTTPPNEVLTRYSSSSETTRDTFASNSSVSTVIELTTTTMDTNDLT TATASNRAFTSDNVTAMPMSQNTCPGISEY |
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