Gene
| Gene Model ID | pfu_aug2.0_3973.1_12558 |
|---|---|
| Locus | scaffold3973.1 : 36146 ... 50171 : + |
| To GenomeBrowser | scaffold3973.1:36146..50171 |
| Genes list of scaffold | scaffold3973.1 |
| Synonym | pfu_aug1.0_2538.1_23010 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_3973.1_12558.t1 | 1 | 1 | Laminin_G_2 | 27 | 122 | 1.3e-13 | 51.1 | 2.3e-17 | 1.7e-13 | 50.7 |
| pfu_aug2.0_3973.1_12558.t1 | 1 | 1 | Laminin_G_1 | 28 | 103 | 7.8e-11 | 42.1 | 1.2e-14 | 9.2e-11 | 41.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_3973.1_12558.t1 | gi|676494751|ref|XP_009066664.1| | hypothetical protein LOTGIDRAFT_229859 [Lottia gigantea] | 9.0e-15 |
| pfu_aug2.0_3973.1_12558.t1 | gi|524906011|ref|XP_005108360.1| | PREDICTED: protein crumbs-like [Aplysia californica] | 8.0e-11 |
| pfu_aug2.0_3973.1_12558.t1 | gi|755970485|ref|XP_011306843.1| | PREDICTED: laminin subunit alpha [Fopius arisanus] | 3.0e-10 |
| pfu_aug2.0_3973.1_12558.t1 | gi|524903201|ref|XP_005107810.1| | PREDICTED: laminin subunit alpha-like [Aplysia californica] | 1.0e-09 |
| pfu_aug2.0_3973.1_12558.t1 | gi|697843335|ref|XP_009642025.1| | PREDICTED: laminin subunit alpha-5 [Egretta garzetta] | 2.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_3973.1_12558.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3973.1_12558.t1 atgtctggcagtttggtcaagatggccgccttaagtaaaacctttgtcaacgggcacattttgtcatttgacgtaaatat gacgtcatcagatggcgttgtgttttacctgctaggtcaaggtcgaagaaggtcagagttcatcgccttggaggtagcca atggtcacttccggtatcatataaaatgcggatatctggacgctttactaaccatcacagatataagggctaatgaccgc aaatggcacacgattcagtttttccgacgatctacgaggggtaatctaaaagtagacggcaaacgttattttcaccatta tcccgtacattgccgaggacttcatacgctggtgtttggcggtgtcagtcccgaacatcgccgagcggtacacacgatac gg |
|
Protein
| Protein ID | pfu_aug2.0_3973.1_12558.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_3973.1_12558.t1 MSGSLVKMAALSKTFVNGHILSFDVNMTSSDGVVFYLLGQGRRRSEFIALEVANGHFRYHIKCGYLDALLTITDIRANDR KWHTIQFFRRSTRGNLKVDGKRYFHHYPVHCRGLHTLVFGGVSPEHRRAVHTIR |
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