Gene
| Gene Model ID | pfu_aug2.0_4.1_13310 |
|---|---|
| Locus | scaffold4.1 : 74004 ... 99465 : - |
| To GenomeBrowser | scaffold4.1:74004..99465 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_7210.1_38480 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| noninactivating potassium channel | GO:0005249 GO:0005886 GO:0006813 GO:0016021 GO:0030431 GO:0034220 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13310.t1 | 1 | 1 | BTB_2 | 32 | 122 | 2.6e-28 | 98.0 | 1.2e-31 | 5.8e-28 | 96.9 |
| pfu_aug2.0_4.1_13310.t1 | 3 | 1 | Ion_trans_2 | 180 | 194 | 5.3e-10 | 38.8 | 1.1 | 5500.0 | -2.9 |
| pfu_aug2.0_4.1_13310.t1 | 2 | 1 | Ion_trans | 184 | 194 | 3.5e-28 | 98.2 | 0.3 | 1500.0 | -1.8 |
| pfu_aug2.0_4.1_13310.t1 | 2 | 2 | Ion_trans | 243 | 429 | 3.5e-28 | 98.2 | 7.1e-32 | 3.5e-28 | 98.2 |
| pfu_aug2.0_4.1_13310.t1 | 3 | 2 | Ion_trans_2 | 248 | 254 | 5.3e-10 | 38.8 | 2.4 | 12000.0 | -3.9 |
| pfu_aug2.0_4.1_13310.t1 | 3 | 3 | Ion_trans_2 | 353 | 431 | 5.3e-10 | 38.8 | 1.1e-13 | 5.3e-10 | 38.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13310.t1 | gi|325297168|ref|NP_001191593.1| | noninactivating potassium channel [Aplysia californica] | 0.0 |
| pfu_aug2.0_4.1_13310.t1 | gi|696961143|ref|XP_009568921.1| | PREDICTED: potassium voltage-gated channel subfamily C member 3-like, partial [Cuculus canorus] | 0.0 |
| pfu_aug2.0_4.1_13310.t1 | gi|657568919|ref|XP_008287915.1| | PREDICTED: potassium voltage-gated channel subfamily C member 1 isoform X2 [Stegastes partitus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13310.t1 atgactgaggaggatccagacacgttcctggacgacataggcgccacaccaatacataggaatgggaagcgcatggcagg ggacgaggaaagggtggtgcttaatgtgggcggaataagacatgaaacacatgtgtctacccttcggactgtaccaggca cccgacttgccaggctggctgagagacatgtactggccaagaataagaaaaatgaatacttctttgacaggcatccggct gtttttaattccgtcatagactactacaggacaggtgagctacacgttcccctggaagtatgcggtgctgtggtaaagag ggaattggagttctggcagatcaaccaacatgcaataaagtcttgttgttggagacattacaagacttacatagaaaata aacgtatcctcgactcattcaacagaagcttaaagaaagaacagttttctctggatttagatgattataaaggatggaag aagttccagatgagagtatggctcatcttagagcatccaaggacatcgaaagctgctatggtgtatggtgtggtgtcgct gttgtttgttgttatttccatcctgggattctgtctcgagactcttccacaatatcgaccaatcgtcaatacctcattat caagcatggccaaccggagcatgtcacgatgtggcaacggggaatcggagagcatggccgacctcaaaccggacgaaggg ctttacatactggacatcatttgtacggtgtattttacaatagaactaattgtgcgcttttcatttgcgccgattaaaaa agattttgtcatgaccgccatgaacgttatcgatcttcttgctcttgttcctctatatatgcagttgatattcaacacag acaacatgagatcttgctacgcaaatgaacagttggttatagagatcatgtttgtgctgcggatagtacgcatgttcagg atatttcatctcgtcaaacactatcaggcactcaagatcttggtatacgcactcaaagctagcgtacaagagctctgtat gttagcaatatttctcatcatcggtatgttagtgtttgcatccatgatttattacgcggaacgtaagtctatcttcgagc caagtgatgcattcaatactattccaaaaggtttttggtgggcgttgatcacaatgacaacagtgggatatggggatata taccccaaatcccttacgggttatatggtaggtgcggcatgcgcagttagtggagtactcatgattgccctaactatccc tgtaatatctaataactttacattgttctatacgcatgtccgttctaagggcgggaaagacggacatccaattgctgcgt cacgtgaatccttgatggttcactcagaagatagtggcggtacacaggatgataagaggaaactttctaatggttcactc gtggtggaggcgtacatgaatggtacaagtacaataaccaaactcaaacacaatggtagtcctgcttattcccctgttct aaggaaaatcatggaatccaactcaatgggagaaatatccgatcacaaaaaatccacggaaaacgatttggatagatgta acagtgttaaagcaaagtcggacgacggagtaacttactccagcgagacgtttgtttag |
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Protein
| Protein ID | pfu_aug2.0_4.1_13310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13310.t1 MTEEDPDTFLDDIGATPIHRNGKRMAGDEERVVLNVGGIRHETHVSTLRTVPGTRLARLAERHVLAKNKKNEYFFDRHPA VFNSVIDYYRTGELHVPLEVCGAVVKRELEFWQINQHAIKSCCWRHYKTYIENKRILDSFNRSLKKEQFSLDLDDYKGWK KFQMRVWLILEHPRTSKAAMVYGVVSLLFVVISILGFCLETLPQYRPIVNTSLSSMANRSMSRCGNGESESMADLKPDEG LYILDIICTVYFTIELIVRFSFAPIKKDFVMTAMNVIDLLALVPLYMQLIFNTDNMRSCYANEQLVIEIMFVLRIVRMFR IFHLVKHYQALKILVYALKASVQELCMLAIFLIIGMLVFASMIYYAERKSIFEPSDAFNTIPKGFWWALITMTTVGYGDI YPKSLTGYMVGAACAVSGVLMIALTIPVISNNFTLFYTHVRSKGGKDGHPIAASRESLMVHSEDSGGTQDDKRKLSNGSL VVEAYMNGTSTITKLKHNGSPAYSPVLRKIMESNSMGEISDHKKSTENDLDRCNSVKAKSDDGVTYSSETFV |
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